Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H05
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 126 1e-30
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 126 1e-30
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 126 1e-30
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 43 3e-05
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.7
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 4.7
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 6.2
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 25 6.2
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 25 6.2
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 25 8.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 126 bits (305), Expect = 1e-30
Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P + V + ++ESL +
Sbjct: 252 YKIGGIGTVPVGRVETGVIKPGMIVTFAP------AGVTTEVKSVEMHHESLDAGLPGDN 305
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK I RG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDC
Sbjct: 306 VGFNV---KNVSVKDI-RRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDC 361
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTEDN 491
HT HIACKFAE+ EK+DRR+GK E++
Sbjct: 362 HTAHIACKFAELIEKIDRRSGKKIEES 388
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 126 bits (305), Expect = 1e-30
Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P + V + ++ESL +
Sbjct: 252 YKIGGIGTVPVGRVETGVIKPGMIVTFAP------AGVTTEVKSVEMHHESLDAGLPGDN 305
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK I RG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDC
Sbjct: 306 VGFNV---KNVSVKDI-RRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDC 361
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTEDN 491
HT HIACKFAE+ EK+DRR+GK E++
Sbjct: 362 HTAHIACKFAELIEKIDRRSGKKIEES 388
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 126 bits (305), Expect = 1e-30
Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P + V + ++ESL +
Sbjct: 252 YKIGGIGTVPVGRVETGVIKPGMIVTFAP------AGVTTEVKSVEMHHESLDAGLPGDN 305
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK I RG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDC
Sbjct: 306 VGFNV---KNVSVKDI-RRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDC 361
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTEDN 491
HT HIACKFAE+ EK+DRR+GK E++
Sbjct: 362 HTAHIACKFAELIEKIDRRSGKKIEES 388
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 288 GYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTGHIACKFAEIKEKVDRR 467
GYV +KN P F AQ+ +L P ++ GY+ V+ HT FA++ K+D+
Sbjct: 544 GYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKT 602
Query: 468 TGKS 479
KS
Sbjct: 603 NRKS 606
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 472 PVRRSTFSLISANLQAMWPVWQSNTGVY 389
P +RST S ++ L W + N GVY
Sbjct: 330 PKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -1
Query: 143 AGAKTTTDQALGYQFQLTHGYCSNTAICIRPRAEFCSPG 27
+GA ++ LG F C AIC P C PG
Sbjct: 350 SGASGSSASILGISFPSLCRTCPPNAICPSPNYVECKPG 388
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 82 TVPIPPFVYVLVPNSAARGS 23
TVP PPFV PN G+
Sbjct: 49 TVPPPPFVNTTAPNGTCLGN 68
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 25.0 bits (52), Expect = 6.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 257 PYLGQGNLRAWLRCRRFEKQPTQ 325
PYLG ++ W R + F P +
Sbjct: 108 PYLGMTRMQRWKRAKNFNLNPPE 130
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 115 AWSVVVFAPANITTEVKSVEMQPLRALTMKACYPGC 222
AW + T +K+ E+ PL AL + P C
Sbjct: 178 AWKIAPAVACGNTIILKTAELTPLSALCLTKFVPEC 213
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 8.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 154 TEVKSVEMQPLRALTMKACYPGCNNWLGLQPVKRTVSWSRQFARVVTLQEIRK 312
T + QP + ++C C+N L +QP + W F +T + RK
Sbjct: 415 TTMMKTRSQPFWIIVSESCIILCDNMLSMQPADVFI-WDVDFE--ITRKNFRK 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,538
Number of Sequences: 5004
Number of extensions: 45976
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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