Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H05
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 112 2e-25
03_01_0547 + 4093196-4093657,4094267-4095148 112 2e-25
03_01_0544 + 4082528-4082989,4083585-4084466 112 2e-25
03_01_0543 + 4076981-4077442,4078145-4079026 112 2e-25
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 30 1.2
09_06_0367 + 22601881-22602097,22602212-22603254 29 1.5
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 29 2.0
02_05_0316 - 27825871-27826509 29 2.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 2.7
12_02_1265 - 27435096-27437675 28 4.7
08_02_0807 + 21411799-21412665 28 4.7
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 28 4.7
11_04_0242 - 15273774-15274043,15274131-15274235 27 6.2
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 27 6.2
11_04_0052 - 12871948-12872073,12872257-12872532,12873398-12873565 27 8.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 112 bits (269), Expect = 2e-25
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P S + + ++E+L +
Sbjct: 242 YKIGGIGTVPVGRVETGVLKPGMVVTFGP------SGLTTEVKSVEMHHEALQEALPGDN 295
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK + RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDC
Sbjct: 296 VGFNV---KNVAVKDL-KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDC 351
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTE 485
HT HIA KFAE+ K+DRR+GK E
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELE 376
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 112 KAWSVVVFAPANITTEVKSVEM 177
K VV F P+ +TTEVKSVEM
Sbjct: 261 KPGMVVTFGPSGLTTEVKSVEM 282
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 112 bits (269), Expect = 2e-25
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P S + + ++E+L +
Sbjct: 242 YKIGGIGTVPVGRVETGVLKPGMVVTFGP------SGLTTEVKSVEMHHEALQEALPGDN 295
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK + RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDC
Sbjct: 296 VGFNV---KNVAVKDL-KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDC 351
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTE 485
HT HIA KFAE+ K+DRR+GK E
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELE 376
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 112 KAWSVVVFAPANITTEVKSVEM 177
K VV F P+ +TTEVKSVEM
Sbjct: 261 KPGMVVTFGPSGLTTEVKSVEM 282
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 112 bits (269), Expect = 2e-25
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P S + + ++E+L +
Sbjct: 242 YKIGGIGTVPVGRVETGVLKPGMVVTFGP------SGLTTEVKSVEMHHEALQEALPGDN 295
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK + RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDC
Sbjct: 296 VGFNV---KNVAVKDL-KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDC 351
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTE 485
HT HIA KFAE+ K+DRR+GK E
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELE 376
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 112 KAWSVVVFAPANITTEVKSVEM 177
K VV F P+ +TTEVKSVEM
Sbjct: 261 KPGMVVTFGPSGLTTEVKSVEM 282
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 112 bits (269), Expect = 2e-25
Identities = 66/145 (45%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P S + + ++E+L +
Sbjct: 242 YKIGGIGTVPVGRVETGVLKPGMVVTFGP------SGLTTEVKSVEMHHEALQEALPGDN 295
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK + RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDC
Sbjct: 296 VGFNV---KNVAVKDL-KRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDC 351
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTE 485
HT HIA KFAE+ K+DRR+GK E
Sbjct: 352 HTSHIAVKFAELVTKIDRRSGKELE 376
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 112 KAWSVVVFAPANITTEVKSVEM 177
K VV F P+ +TTEVKSVEM
Sbjct: 261 KPGMVVTFGPSGLTTEVKSVEM 282
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 169 VEMQPLRALTMKACYPGCNNWLGLQPVKRTVSW-SRQFARVVTLQEIRKT 315
V M PLR C+P C W+ LQ + SW +R F VT + T
Sbjct: 752 VAMVPLRGSRQHPCFPQCVEWI-LQNQQDDGSWGTRGFGVAVTRDVLSST 800
>09_06_0367 + 22601881-22602097,22602212-22603254
Length = 419
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 PRVQQLVGFTTGQENRILVKAICARGYVAGDSKNNPPRGAA-DFTAQV 353
P + L+G+ T ++RILV ARG + + PP AA D+T ++
Sbjct: 167 PNLVTLLGYCTDGDHRILVYEYMARGSLEDHLLDLPPGAAALDWTTRM 214
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 83 YCSNTAICIRPRAEFCSP 30
Y ++TAICIR EFCSP
Sbjct: 409 YPAHTAICIRDGWEFCSP 426
>02_05_0316 - 27825871-27826509
Length = 212
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 195 YNESLLPRVQQLVGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPG 374
Y+E LLPR+ V G +R L+ A A G GD +NPP G A +++ G
Sbjct: 7 YSELLLPRLLLQVLLLLGHLHRFLLWAFHAVG--LGDLIDNPP-GLAATEQDLMLQGRGG 63
Query: 375 QISNGY 392
++ G+
Sbjct: 64 GMAEGW 69
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 360 LNHPGQISNGYTPVLDCHTGHIACK 434
L+ P +ISNG TPV D ++G C+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQ 295
>12_02_1265 - 27435096-27437675
Length = 859
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 192 SYNESLLPRVQQLVGFTTGQENRILVKAICARGYV-AGDSKNNPPRGAADFTAQVIVLNH 368
S+N+ LP + + + +N L K + GY + S + PP A+ +Q+ H
Sbjct: 181 SHNQHSLPEAK--MPYNPSVQNN-LGKGVSRSGYAKSNQSFSGPPAMVANSPSQIKNQRH 237
Query: 369 PGQISNGY 392
PGQ Y
Sbjct: 238 PGQRHTNY 245
>08_02_0807 + 21411799-21412665
Length = 288
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -3
Query: 186 QWLHFH-GLDFSS--DVSRGKN--DNRPGFRIPVSTYPRVLFQYRHL 61
QW+ FH G DF + G+N DN P F + Y VL+ +HL
Sbjct: 164 QWITFHSGYDFGYLLRLLTGRNLPDNMPAFFDLIRIYFPVLYDIKHL 210
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +3
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VG +L A AR A SK GAA + +L P ++ Y P+ C
Sbjct: 43 VGLALHAHGALLAAAAAARA--AACSKGGGGGGAAAGSGVHELLECPVCTNSMYPPIHQC 100
Query: 411 HTGHIAC 431
GH C
Sbjct: 101 QNGHTLC 107
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 438 QICRLCGLCGNPIQVCI 388
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 252 ENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTGHIAC 431
E+R +V+ A G+V + + P A + +VL + S+GY L C +
Sbjct: 466 ESRTIVRMWIAEGFVQDSTGSGLPEAVAAQYYKELVLRNLLDPSDGYYDQLGCTMHDVVR 525
Query: 432 KFAE 443
FA+
Sbjct: 526 SFAQ 529
>11_04_0052 - 12871948-12872073,12872257-12872532,12873398-12873565
Length = 189
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/66 (22%), Positives = 26/66 (39%)
Frame = +2
Query: 218 GATIGWVYNRSREPYLGQGNLRAWLRCRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHT 397
G + WV R R +G+ R + C + G C++ R+N ++
Sbjct: 102 GEVVDWVQRRKRGTDVGEKGRRGEVSCACSLDSVSVGPCKVAHGGGQVAGKRANKGKVWQ 161
Query: 398 CIGLPH 415
+G PH
Sbjct: 162 AVG-PH 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,002
Number of Sequences: 37544
Number of extensions: 335063
Number of successful extensions: 1009
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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