Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H05
(491 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 151 4e-39
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 149 1e-38
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 144 3e-37
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 34 0.001
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 0.76
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 22 3.1
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 22 3.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 4.1
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 21 9.4
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 21 9.4
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 9.4
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 151 bits (366), Expect = 4e-39
Identities = 85/146 (58%), Positives = 98/146 (67%), Gaps = 1/146 (0%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQQLV 233
Y GGIGTVPVG+++ + + F P ++V+ + E+L V
Sbjct: 254 YKIGGIGTVPVGRVETGILKPGMLVTFAPA--ALTTEVKSVEMHHEALTEAL---PGDNV 308
Query: 234 GFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 413
GF I VK + RGYVAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDCH
Sbjct: 309 GFNV---KNISVKEL-RRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 364
Query: 414 TGHIACKFAEIKEKVDRRTGKSTEDN 491
T HIACKFAEIKEK DRRTGK+TE+N
Sbjct: 365 TAHIACKFAEIKEKCDRRTGKTTEEN 390
Score = 32.3 bits (70), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = +1
Query: 112 KAWSVVVFAPANITTEVKSVEMQPLRALTMKACYPGCN 225
K +V FAPA +TTEVKSVEM ALT PG N
Sbjct: 273 KPGMLVTFAPAALTTEVKSVEMHH-EALT--EALPGDN 307
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 149 bits (362), Expect = 1e-38
Identities = 83/147 (56%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P + + + ++E+L V
Sbjct: 254 YKIGGIGTVPVGRVETGVLKPGMVVTFAP------AGLTTEVKSVEMHHEALQEAVPGDN 307
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF + VK + RGYVAGDSKNNPP+GAADFTAQVIVLNHPGQISNGYTPVLDC
Sbjct: 308 VGFNV---KNVSVKEL-RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDC 363
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTEDN 491
HT HIACKFA+IKEK DRR GK+TE+N
Sbjct: 364 HTAHIACKFADIKEKCDRRNGKTTEEN 390
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 144 bits (350), Expect = 3e-37
Identities = 70/87 (80%), Positives = 73/87 (83%)
Frame = +3
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 410
VGF I VK + RGYVAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDC
Sbjct: 19 VGFNV---KNISVKEL-RRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 74
Query: 411 HTGHIACKFAEIKEKVDRRTGKSTEDN 491
HT HIACKFAEIKEK DRRTGK+TE+N
Sbjct: 75 HTAHIACKFAEIKEKCDRRTGKTTEEN 101
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 33.9 bits (74), Expect = 0.001
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 112 KAWSVVVFAPANITTEVKSVEM 177
K VV FAPA +TTEVKSVEM
Sbjct: 216 KPGMVVTFAPAGLTTEVKSVEM 237
Score = 32.7 bits (71), Expect = 0.002
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +3
Query: 57 YTNGGIGTVPVGKLKL-VS*SLVCCRFCPC*HHY*SQVRGNAATESSYNESLLPRVQ-QL 230
Y GGIGTVPVG+++ V + F P + + + ++E+L V
Sbjct: 197 YKIGGIGTVPVGRVETGVLKPGMVVTFAP------AGLTTEVKSVEMHHEALQEAVPGDN 250
Query: 231 VGFTTGQENRILVKAICARGYVAGDSKN 314
VGF + VK + RGYVAGDSKN
Sbjct: 251 VGFNV---KNVSVKEL-RRGYVAGDSKN 274
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.2 bits (50), Expect = 0.76
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 311 KQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHRP 421
K TQ S + + + P S +R HT G+P +P
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQP 1084
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 199 MKACYPGCNNWLGLQPVKRTVSWSR 273
+K G W+ +KR SWSR
Sbjct: 25 LKRLITGDEKWVVYNNIKRKRSWSR 49
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 22.2 bits (45), Expect = 3.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 199 MKACYPGCNNWLGLQPVKRTVSWSR 273
+K G W+ +KR SWSR
Sbjct: 146 LKRLITGDEKWVVYNNIKRKRSWSR 170
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.8 bits (44), Expect = 4.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 475 LPVRRSTFSLISANLQAMWPVWQ 407
LP+R +S N +PVWQ
Sbjct: 887 LPLRSLEILRLSGNRLVTFPVWQ 909
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 20.6 bits (41), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 187 RALTMKACYPGCNNWLGLQPVKRTV 261
+ L +K C PGC LG K+ V
Sbjct: 60 KPLCIKICAPGCVCRLGYLRNKKKV 84
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 20.6 bits (41), Expect = 9.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 187 RALTMKACYPGCNNWLGLQPVKRTV 261
+ L +K C PGC LG K+ V
Sbjct: 60 KPLCIKICAPGCVCRLGYLRNKKKV 84
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 20.6 bits (41), Expect = 9.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 314 QPTQGSCRLHSASHCAKSPRS 376
Q TQ LH S A+SP S
Sbjct: 665 QHTQSQLHLHLTSPPARSPSS 685
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,679
Number of Sequences: 438
Number of extensions: 3307
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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