Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H04
(436 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 121 4e-29
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 2.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 5.0
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.0
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 5.0
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 5.0
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c... 25 5.0
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 24 8.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 24 8.8
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 24 8.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 121 bits (292), Expect = 4e-29
Identities = 55/110 (50%), Positives = 78/110 (70%)
Frame = +2
Query: 83 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 262
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 263 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPV 412
P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAP+
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPL 117
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 35 PYFTQSKMGREDKATWKSNY 94
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 209 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 343
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 203 HSIVLMGKNTMMRKAIKDHLE 265
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 434 MSGNDVRQLEQWLQDEPGLGL 372
+SG D + L W+ D GLGL
Sbjct: 609 ISGRDQQFLRNWMDDIKGLGL 629
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 229 HHDEESHQGPS*NKSSSRKTASSHQG 306
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 8 GLVLKFLRSPYFTQSKM---GREDKATWKSNYFVKI 106
G + F FT+ K GR KAT K NY VK+
Sbjct: 49 GCLFWFSNGALFTEGKARDRGRWAKATMKKNYGVKL 84
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 154 VRTHYET-FWVFVQQLDDFNEVIGLPGSLVLP 62
V H ET +++VQ + N+ + + GSL P
Sbjct: 477 VAMHVETTLYIYVQSFQNANQTVSICGSLPEP 508
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 226 KHHDEESHQGPS*NKSSSRKTASSHQG 306
KHH+ E H+GP ++ K H+G
Sbjct: 343 KHHELEEHEGPEHHRGPEDK--EHHKG 367
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 8.8
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +1
Query: 310 CWLCLHPW 333
CW+CL PW
Sbjct: 317 CWVCLGPW 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,447
Number of Sequences: 5004
Number of extensions: 41634
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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