Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H04
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 122 1e-28
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 122 2e-28
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 122 2e-28
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 1.6
02_04_0427 - 22809481-22810335 28 2.9
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 2.9
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 5.0
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 6.6
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 27 6.6
07_03_0662 + 20431448-20432767 27 6.6
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 27 6.6
04_01_0404 - 5297341-5297970,5298304-5299179 27 6.6
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598 27 6.6
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 27 8.7
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 8.7
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 8.7
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 8.7
06_01_1085 - 8886868-8887556,8887629-8888574 27 8.7
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 8.7
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 8.7
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 122 bits (294), Expect = 1e-28
Identities = 63/119 (52%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Frame = +2
Query: 62 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 241
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 242 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPV 412
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +APV
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPV 122
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 122 bits (293), Expect = 2e-28
Identities = 63/119 (52%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Frame = +2
Query: 62 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 241
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 242 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPV 412
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +APV
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPV 122
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 122 bits (293), Expect = 2e-28
Identities = 63/119 (52%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Frame = +2
Query: 62 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 241
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 242 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPV 412
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +APV
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPV 122
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 406 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 299
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 274 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 188
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 301 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 185
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 83 KSNYFVKIIQLLDEYPKCF 139
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 125 YPKCFI--VGADNVGSQQMQQIRISL 196
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 128 PKCFIVGADNVGSQQ-MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIK 304
P +V ++ G+ Q +Q + L G +++ R ++ LE NP L+ + K
Sbjct: 248 PAMSLVRSETTGTVQGVQTSKHILYGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRK 307
Query: 305 GNVGFVFTRGDLVDVRDKLLE 367
G++ V + D + + L+E
Sbjct: 308 GHL-LVLDKFDKLKLNHGLME 327
>07_03_0662 + 20431448-20432767
Length = 439
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 188 YGSVASVASLHCPHPL 141
YG +AS SL CP PL
Sbjct: 417 YGGLASAGSLQCPRPL 432
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 140 IVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLL 292
++G +NV M RI+ R H+++ +G + +K+ + PA+E+ +
Sbjct: 559 VLGEENVNVSFMSVGRIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFV 609
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 215 LMGKNTMMRKAIKDHLETNPALEKLLPHI 301
L+ + M+ IK+ L NP L LLPH+
Sbjct: 342 LLENLSYMKLVIKETLRLNPVLPLLLPHL 370
>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
Length = 94
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 184 PYFIAWSQHCAHGQKHHDEESHQG 255
P+ S+ C H Q H+ EE+H G
Sbjct: 13 PHHCVCSELCMHTQIHYTEETHTG 36
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 314 GFVFTRGDLVDVRDKLLENKVQAPARP 394
GF TR LVD++ +++ +K+ PA P
Sbjct: 192 GFELTRVTLVDIKGEVVLDKLVKPANP 218
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 284 KLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP 385
KLLP VGFV RG V +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 214 AHGQKHHDEESHQGPS*NKSSSRKTASSHQGKC 312
A ++ + G S N +SS KTA S Q KC
Sbjct: 740 AEQEQPEENAEASGESGNTNSSHKTAHSSQNKC 772
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 164 SLHCPHPL*NILGIRPTVG 108
S+ CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 218 MGKNTMMRKAIKDHLETNPALEKLLP 295
+GK T++R A+K+ + +P L L+P
Sbjct: 378 LGKMTLLRAAMKEAMRLHPPLPLLIP 403
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 164 SLHCPHPL*NILGIRPTVG 108
S+ CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 224 KNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLE 367
K T RK HL+ N AL K+ V +G L+++ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,079
Number of Sequences: 37544
Number of extensions: 286268
Number of successful extensions: 767
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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