Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H04
(436 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic ri... 205 4e-53
BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein. 205 4e-53
BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, larg... 205 4e-53
AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0 va... 205 4e-53
AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein. 205 4e-53
AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0 va... 204 1e-52
AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein. 202 4e-52
BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein. 197 2e-50
U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein. 30 3.0
U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein. 30 3.0
U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3 pro... 30 3.0
BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3 p... 30 3.0
AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3 p... 30 3.0
AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3 p... 30 3.0
AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3 p... 30 3.0
AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C ... 30 3.0
EF567077-1|ABQ63084.1| 1328|Homo sapiens Fanconi anemia compleme... 29 5.2
EF469766-1|ABP88002.1| 1328|Homo sapiens Fanconi anemia compleme... 29 5.2
AK027564-1|BAB55200.1| 906|Homo sapiens protein ( Homo sapiens ... 29 5.2
AK001581-1|BAA91770.1| 1084|Homo sapiens protein ( Homo sapiens ... 29 5.2
AB058697-1|BAB47423.1| 802|Homo sapiens KIAA1794 protein protein. 29 5.2
AK124794-1|BAC85951.1| 244|Homo sapiens protein ( Homo sapiens ... 29 6.9
L29222-1|AAB59459.1| 136|Homo sapiens clk1 protein. 29 9.1
L29219-1|AAA61480.1| 484|Homo sapiens clk1 protein. 29 9.1
BC031549-1|AAH31549.1| 484|Homo sapiens CDC-like kinase 1 protein. 29 9.1
BC028149-1|AAH28149.1| 136|Homo sapiens CDC-like kinase 1 protein. 29 9.1
AC005037-5|AAY14722.1| 484|Homo sapiens unknown protein. 29 9.1
>M17885-1|AAA36470.1| 317|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P0 mRNA, complete cds. ).
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC107717-1|AAI07718.1| 255|Homo sapiens RPLP0 protein protein.
Length = 255
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC015690-1|AAH15690.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC015173-1|AAH15173.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC009867-1|AAH09867.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC008594-1|AAH08594.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC008092-1|AAH08092.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC005863-1|AAH05863.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC003655-1|AAH03655.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC001834-1|AAH01834.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC001127-1|AAH01127.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC000752-1|AAH00752.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC000345-1|AAH00345.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC000087-1|AAH00087.1| 317|Homo sapiens ribosomal protein, large,
P0 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>AK222571-1|BAD96291.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>AC004263-1|AAC05176.1| 317|Homo sapiens WUGSC:H_278C19.2 protein.
Length = 317
Score = 205 bits (501), Expect = 4e-53
Identities = 95/118 (80%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>AK222468-1|BAD96188.1| 317|Homo sapiens ribosomal protein P0
variant protein.
Length = 317
Score = 204 bits (498), Expect = 1e-52
Identities = 94/118 (79%), Positives = 107/118 (90%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMG+NTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGRNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI+GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>AY064377-1|AAL62450.1| 317|Homo sapiens BLOCK 23 protein.
Length = 317
Score = 202 bits (493), Expect = 4e-52
Identities = 95/118 (80%), Positives = 105/118 (88%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG +VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLPHI GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 118
>BC070194-1|AAH70194.1| 254|Homo sapiens RPLP0 protein protein.
Length = 254
Score = 197 bits (480), Expect = 2e-50
Identities = 93/118 (78%), Positives = 106/118 (89%)
Frame = +2
Query: 56 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 235
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 236 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 409
MRKAI+ HLE NPALEKLLP ++GNVGFVFT+ DL ++RD LL NKV A AR GAIAP
Sbjct: 61 MRKAIRGHLENNPALEKLLP-LRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAP 117
>U75697-1|AAB88241.1| 428|Homo sapiens RPD3-2B protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>U75696-1|AAB88240.1| 429|Homo sapiens RPD3-2A protein.
Length = 429
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 229 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 277
>U66914-1|AAC52038.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>BC000614-1|AAH00614.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF059650-1|AAC26509.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF053138-1|AAC08351.1| 259|Homo sapiens histone deacetylase 3
protein.
Length = 259
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 134 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 182
>AF039703-1|AAC98927.1| 428|Homo sapiens histone deacetylase 3
protein.
Length = 428
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 276
>AF005482-1|AAB87752.1| 371|Homo sapiens histone deacetylase-3C
protein.
Length = 371
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +2
Query: 68 DKATWKSNYFVKIIQLLDEY-PKCFIV--GADNVGSQQMQQIRISLRGH 205
D ++K + I Q++D Y P C ++ GAD++G ++ +S+RGH
Sbjct: 171 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGH 219
>EF567077-1|ABQ63084.1| 1328|Homo sapiens Fanconi anemia
complementation group I protein.
Length = 1328
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 243 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 362
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 636 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 674
>EF469766-1|ABP88002.1| 1328|Homo sapiens Fanconi anemia
complementation group I isoform 3 protein.
Length = 1328
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 243 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 362
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 636 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 674
>AK027564-1|BAB55200.1| 906|Homo sapiens protein ( Homo sapiens
cDNA FLJ14658 fis, clone NT2RP2002549. ).
Length = 906
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 243 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 362
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 274 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 312
>AK001581-1|BAA91770.1| 1084|Homo sapiens protein ( Homo sapiens
cDNA FLJ10719 fis, clone NT2RP3001109. ).
Length = 1084
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 243 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 362
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 457 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 495
>AB058697-1|BAB47423.1| 802|Homo sapiens KIAA1794 protein protein.
Length = 802
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 243 KPSRTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINC 362
+P +L ++L C LT + ++L P++ LL C+ +C
Sbjct: 110 EPKPDLLPPLKLEA-CILTQGDKISLQEPLDYLLCCIQHC 148
>AK124794-1|BAC85951.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ42804 fis, clone BRCAN2002856, highly similar
to AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY A
MEMBER 2. ).
Length = 244
Score = 29.1 bits (62), Expect = 6.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 200 GHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQ 379
G+ +VLM + M R A +D +ET P ++ K + VF D+ KV
Sbjct: 156 GNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYK-MICHVFESEDVSKPLPGHSPPKVH 214
Query: 380 APAR---PGAI 403
+P R PGA+
Sbjct: 215 SPGRLQDPGAV 225
>L29222-1|AAB59459.1| 136|Homo sapiens clk1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 309
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>L29219-1|AAA61480.1| 484|Homo sapiens clk1 protein.
Length = 484
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 309
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>BC031549-1|AAH31549.1| 484|Homo sapiens CDC-like kinase 1 protein.
Length = 484
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 309
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>BC028149-1|AAH28149.1| 136|Homo sapiens CDC-like kinase 1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 309
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
>AC005037-5|AAY14722.1| 484|Homo sapiens unknown protein.
Length = 484
Score = 28.7 bits (61), Expect = 9.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASSHQGK 309
D Y ++Q C G + D ES +KSS R SS++ K
Sbjct: 74 DEYRNDYTQGCEPGHRQRDHESRYQNHSSKSSGRSGRSSYKSK 116
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,776,969
Number of Sequences: 237096
Number of extensions: 1622065
Number of successful extensions: 3603
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3602
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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