Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H03
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    29   0.23 
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   0.53 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   2.8  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   3.7  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   3.7  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    24   6.5  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    23   8.6  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    23   8.6  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    23   8.6  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 147 PAFRPLVPLWRDSTRGSHATDQLNDVENTYDYHLLMVIVEAL 272
           P+  P +  W     GS    +L  +EN YD  L   ++ AL
Sbjct: 139 PSKNPYIEKWEGLRTGSTLGKKLFQIENVYDSSLASSVINAL 180


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 17  WKKDSVIRINNVDDKQETPNSEKDIRAKLDMATKSRFERN 136
           WKK   +  +  DD +   ++   +  K+  AT+S F RN
Sbjct: 852 WKKPKSLIFSEADDVETESSTNSSVLQKVYTATRSIFGRN 891


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 171 LWRDSTRGSHATDQLNDVENTYDYHLLMVIVEAL 272
           ++ ++ + SH  D LN V N Y  ++++V ++ +
Sbjct: 288 IYVEARKQSHVLDALNGVLNVYTNNMILVPIKEM 321


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 131 RNWTIPCISSIGAVMERLHKRLACDRS 211
           RNW    I ++  ++E  +K LA DRS
Sbjct: 514 RNWIFQQIEALVDLIENQYKHLAHDRS 540


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 23  KDSVIRINNVDDKQETPNSEKDIRAKLDMATKSRFERNWTIP 148
           K S   INN   K+E  + E +   KL     + F R   +P
Sbjct: 249 KSSGFHINNGKSKEEKSHGENESGGKLKNKMSTLFRRKTIMP 290


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 193 PLVESLHNGTNGRNAGYCPVPLEPGLSCH 107
           P   SL+ G+   +  Y   PL PG S H
Sbjct: 316 PSANSLYRGSVANHYYYVGDPLTPGWSAH 344


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 127 REELDNTLHFVHWCR---YGETPQEARMRQISLTTSKTP 234
           +EEL N L+FVH      YGE  + A + + S     +P
Sbjct: 135 KEELRNRLNFVHVSTDEVYGEQDENASVDEKSKLNPTSP 173


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 50  VDDKQETPNSEKDIRAKLDMATKSRFERNW 139
           +DD Q    ++  IR +  +  K + +RNW
Sbjct: 361 LDDVQSAQITQFQIRLQQRLTKKEQLDRNW 390


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -3

Query: 299 FIVASSKGPKRLNDYHQKMIIIGV 228
           +++A +KG    N+ +QK++  G+
Sbjct: 25  YLIAEAKGSSSSNNLYQKLVSFGM 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,489
Number of Sequences: 5004
Number of extensions: 27567
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)