Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H03
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0271 - 13694669-13694770,13694859-13694999,13695258-136953...    27   2.6  
08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199     27   4.5  
10_06_0184 - 11577331-11577360,11577616-11577722,11578048-115781...    26   5.9  
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200     26   5.9  
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497     26   5.9  
04_03_0621 - 18102243-18104249                                         26   5.9  
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313...    26   5.9  

>04_03_0271 -
           13694669-13694770,13694859-13694999,13695258-13695370,
           13696253-13696304,13696538-13696660,13696985-13697091,
           13697280-13697329,13698284-13698387,13698610-13698690,
           13698829-13698913,13699370-13699446,13700587-13700676,
           13701338-13701397,13701768-13701872,13701986-13702035,
           13702174-13702280,13704735-13704805,13704916-13705144,
           13705228-13705704,13705807-13706405
          Length = 940

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 56  DKQETPNSEKDIRAKLDMATK-SRFERNWTI 145
           D  E    EKDIR  +D+AT   R E+N+ I
Sbjct: 395 DSWERAEREKDIRQGIDLATTLERIEKNFVI 425


>08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199
          Length = 342

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 83  SRCWESPACRPRYLC 39
           +R +ESPA R RYLC
Sbjct: 247 ARAYESPAARGRYLC 261


>10_06_0184 -
           11577331-11577360,11577616-11577722,11578048-11578126,
           11578213-11578299,11580935-11581207,11581298-11581447,
           11582186-11582785
          Length = 441

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 193 PLVESLHNGTNGRNAGYCPVPLE-PGLSCH 107
           PL E +H    G  AG+  +PL+ PG + H
Sbjct: 217 PLTEKIHGWFTGLVAGFRSLPLDMPGTALH 246


>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
          Length = 405

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +2

Query: 14  FWKKDSVIRIN------NVDDKQETPNSEKDIRAKLDMATKSRF 127
           FW  +S+++I       ++DD++  PN  +   ++LD  T  R+
Sbjct: 284 FWDMESLVQITPDGEEIDLDDEESNPNKLRSYVSRLDADTLQRY 327


>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
          Length = 405

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +2

Query: 14  FWKKDSVIRIN------NVDDKQETPNSEKDIRAKLDMATKSRF 127
           FW  +S+++I       ++DD++  PN  +   ++LD  T  R+
Sbjct: 284 FWDMESLVQITPDGEEIDLDDEESNPNKLRSYVSRLDADTLQRY 327


>04_03_0621 - 18102243-18104249
          Length = 668

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 81  RKISELSWIWQLSPGSRGT 137
           R   +LSW+WQ  P S G+
Sbjct: 104 RNYEDLSWVWQKQPWSFGS 122


>02_05_0230 +
           27029725-27030871,27030995-27031113,27031225-27031349,
           27031491-27031590,27031680-27031757,27032818-27032901,
           27033077-27033162,27033869-27034049,27034596-27034646
          Length = 656

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 63  RRLPTARKISELSWIWQL--SPGSRGTGQ 143
           RRL T + +S L+ IW L   P S GT Q
Sbjct: 56  RRLTTPQLVSALTGIWNLVGQPESSGTAQ 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,453,192
Number of Sequences: 37544
Number of extensions: 192522
Number of successful extensions: 524
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)