Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H03
         (325 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF161369-1|AAF28929.1|  143|Homo sapiens HSPC106 protein.              29   3.2  
AF044491-1|AAC00188.1|  194|Homo sapiens olfactory receptor-like...    29   4.3  
AM279557-1|CAK50676.1|  116|Homo sapiens immunoglobulin A heavy ...    28   5.6  
AJ402394-1|CAC15681.1|   79|Homo sapiens immunoglobulin heavy ch...    28   5.6  
Z29631-1|CAA82738.1|   98|Homo sapiens immunoglobulin heavy chai...    28   7.4  
Z12303-1|CAA78173.1|   98|Homo sapiens Ig H-chain V-region (DP-1...    28   7.4  
L00022-1|AAB59424.1|  574|Homo sapiens IGHE protein.                   28   7.4  
DQ065683-1|ABA00093.1|  120|Homo sapiens immunoglobulin epsilon ...    28   7.4  
BC016617-1|AAH16617.1|  596|Homo sapiens vacuolar protein sortin...    27   9.8  
AY070433-1|AAL65260.1|  255|Homo sapiens hypothetical protein GL...    27   9.8  
AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens ...    27   9.8  
AK026840-1|BAB15570.1|  443|Homo sapiens protein ( Homo sapiens ...    27   9.8  
AK026048-1|BAB15336.1|  253|Homo sapiens protein ( Homo sapiens ...    27   9.8  
AF439857-1|AAL33577.1|  596|Homo sapiens vacuolar sorting protei...    27   9.8  

>AF161369-1|AAF28929.1|  143|Homo sapiens HSPC106 protein.
          Length = 143

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 24  RTL*YA*ITWTTSRRLPTARKISELSWIWQLSPGSRGTGQYPAFRPLVPL 173
           R++ Y  +   + R L    K++ + W   L P S   G + AFRP +PL
Sbjct: 60  RSISYMFLELLSRRNLIIETKLNGIPWPHSLYPPSWNPGFHSAFRPPLPL 109


>AF044491-1|AAC00188.1|  194|Homo sapiens olfactory receptor-like
           protein protein.
          Length = 194

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 142 CPVPLEPGLSCHIQLSSDIFLAVGSLLLVV---HVIYAYY 32
           C VP   GLSC     ++I LAV S++ VV    +I AYY
Sbjct: 120 CEVPSLIGLSCGDTSYNEIQLAVSSVIFVVVPLSLILAYY 159


>AM279557-1|CAK50676.1|  116|Homo sapiens immunoglobulin A heavy
           chain variable region protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 96  LSWIWQLSPGSRGTGQYPAFRPLVPLWRDSTRGS 197
           L W+ ++SP + GT     FR  V L RD++ G+
Sbjct: 30  LEWMGRISPNTGGTDFSEKFRGRVTLSRDTSTGT 63


>AJ402394-1|CAC15681.1|   79|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 79

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 96  LSWIWQLSPGSRGTGQYPAFRPLVPLWRDST 188
           L W+  ++P S GT   P F+  V L RD++
Sbjct: 13  LEWMGWINPNSGGTNYEPVFQGRVTLTRDTS 43


>Z29631-1|CAA82738.1|   98|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 98

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 93  ELSWIWQLSPGSRGTGQYPAFRPLVPLWRDSTRGSHATDQLNDV--ENTYDYH 245
           EL W+ +++P S GT     F+  V + RD T  S A  +L+ +  E+T  Y+
Sbjct: 44  ELGWMGRINPNSGGTNYAQKFQGRVTMTRD-TSISTAYTELSSLRSEDTATYY 95


>Z12303-1|CAA78173.1|   98|Homo sapiens Ig H-chain V-region (DP-1)
           protein.
          Length = 98

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +3

Query: 93  ELSWIWQLSPGSRGTGQYPAFRPLVPLWRDSTRGSHATDQLNDV--ENTYDYH 245
           EL W+ +++P S GT     F+  V + RD T  S A  +L+ +  E+T  Y+
Sbjct: 44  ELGWMGRINPNSGGTNYAQKFQGRVTMTRD-TSISTAYTELSSLRSEDTATYY 95


>L00022-1|AAB59424.1|  574|Homo sapiens IGHE protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 96  LSWIWQLSPGSRGTGQYPAFRPLVPLWRDST 188
           L W+  ++P S GT   P F+  V + RD++
Sbjct: 63  LEWVGWINPNSGGTNYAPRFQGRVTMTRDAS 93


>DQ065683-1|ABA00093.1|  120|Homo sapiens immunoglobulin epsilon
           heavy chain variable region protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +3

Query: 96  LSWIWQLSPGSRGTGQYPAFRPLVPLWRDSTRGSHATDQLNDVENTYDYHLLMVIVEALW 275
           L W+ +++P S GT     F+  V + RD++  + A  +L+ +   YD   +   V A+W
Sbjct: 45  LEWMGRINPSSGGTNSAQKFQGRVTMTRDTSINT-AYMELSGLR--YDDAAVYYCVRAMW 101


>BC016617-1|AAH16617.1|  596|Homo sapiens vacuolar protein sorting
           33 homolog A (S. cerevisiae) protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 114 LSPGSRGTGQYPAFRPLVPLWRDSTRGSHATD 209
           L P + G   YP  R  + LW D     + TD
Sbjct: 453 LKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTD 484


>AY070433-1|AAL65260.1|  255|Homo sapiens hypothetical protein GL002
           protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 65  ETPNSEKDIRAKLDMATKSRFERNWTIPCISSIGAVME 178
           +TP S+  + A  +  T S+    + IPC SS   V+E
Sbjct: 172 QTPQSQMSLPASSEKQTASQAIPQYAIPCHSSSNVVVE 209


>AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45337 fis, clone BRHIP3007960. ).
          Length = 248

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 29  SVIRINNVDDKQETPNSEKDIRAKLDMATKSRFERNWTI 145
           S+  ++ +DD     +SE+++ + LD+  +  + R W I
Sbjct: 68  SITLVHYIDDIMLIGSSEQEVASTLDLLVRHLYARGWEI 106


>AK026840-1|BAB15570.1|  443|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23187 fis, clone LNG11989. ).
          Length = 443

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 114 LSPGSRGTGQYPAFRPLVPLWRDSTRGSHATD 209
           L P + G   YP  R  + LW D     + TD
Sbjct: 300 LKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTD 331


>AK026048-1|BAB15336.1|  253|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22395 fis, clone HRC07889. ).
          Length = 253

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 114 LSPGSRGTGQYPAFRPLVPLWRDSTRGSHATD 209
           L P + G   YP  R  + LW D     + TD
Sbjct: 110 LKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTD 141


>AF439857-1|AAL33577.1|  596|Homo sapiens vacuolar sorting protein
           33A protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 114 LSPGSRGTGQYPAFRPLVPLWRDSTRGSHATD 209
           L P + G   YP  R  + LW D     + TD
Sbjct: 453 LKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTD 484


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,485,564
Number of Sequences: 237096
Number of extensions: 1061834
Number of successful extensions: 3007
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3007
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)