Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H02
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   2.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   6.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.5  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    23   8.5  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    23   8.5  

>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 304 LSCAICSASVVLRSKRDAVFSPMLRNAP 221
           LSC +    V+++S  D  F P  R AP
Sbjct: 227 LSCVVLYKKVIVKSAIDRAFGPFGRCAP 254


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 76  SPIVAHYSLYSEYIQCTTVLSF 141
           +P++  +S++ +YI+  + LSF
Sbjct: 528 APLLYFFSMHKDYIEAVSALSF 549


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 171 SSTVHNNRNSKMFSVIAGAFRSIGEKTASLFDRKTTDAEQIAQ 299
           +ST+H   +SK  SVI     +IG +  S   +      Q  Q
Sbjct: 325 TSTIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNNQPAQPGQ 367


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 85  VAHYSLYSEYIQCTTVLSFVQYLFK 159
           + HYS Y EY   + V   + YL K
Sbjct: 399 LVHYSGYEEYQLISVVKKMINYLQK 423


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 142 VQYLFKSDHTVLQCIITETP 201
           +QY+F + + +  CI+ E+P
Sbjct: 45  LQYVFLAGNLIFACIVIESP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,644
Number of Sequences: 5004
Number of extensions: 22175
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)