Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H02
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 30 0.45
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185... 28 1.4
12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550... 28 1.8
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 28 1.8
01_03_0293 + 14742630-14743042,14743073-14743370 27 4.2
12_01_0062 + 530180-532398,533123-533213,533398-533613 26 5.6
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224... 26 7.4
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 26 7.4
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243... 25 9.7
08_01_0755 - 7159471-7160124 25 9.7
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840... 25 9.7
04_03_0703 - 18870287-18871351,18871542-18871733 25 9.7
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 25 9.7
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 25 9.7
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 46 KVFLANRAAVSPIVAHYSLYSEYIQCTTVLSFVQYLFK 159
+ +A+ + + H+SL S+ +QCT V YLF+
Sbjct: 215 RCLIADEMGLGKTLQHFSLLSKILQCTNVEIISNYLFQ 252
>04_04_0477 +
25517060-25517152,25517263-25517382,25518203-25518506,
25518944-25519305,25519401-25519575,25520510-25520574,
25520725-25520790,25521275-25521350,25521813-25521922
Length = 456
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -2
Query: 251 SLLANAAERACDYTEHFGVSVIMHCRTV*SLLNKYCTKLNTVV 123
++LAN+ E AC + + +V + C+T+ S + ++N ++
Sbjct: 35 NVLANSPELACQFYTDYSTAVRLDCQTMKSSFGETVEEINDMI 77
>12_01_0650 +
5500662-5501206,5502485-5502563,5503100-5503308,
5504396-5505146
Length = 527
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 189 NRNSKMFSVIAGAFRSIGEKTASLFDRKTTDAEQIAQDKVRE 314
NR + FSV+ A +++ SL K DA + A+D + E
Sbjct: 181 NRTNMAFSVLVFAGKTVATPAISLLVNKLRDAVEEAEDAIDE 222
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 316 ASRTLSCAICSASVVLRSKRD-AVFSPMLRNAPAITLNIL 200
AS LS A +A+ V D VF+P++ +AP ITL ++
Sbjct: 71 ASPALSRAGAAAAAVATVDEDYPVFTPLIPDAPTITLQLI 110
>01_03_0293 + 14742630-14743042,14743073-14743370
Length = 236
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 94 SAPL*AKLRLGSLEILSRFSTRLM 23
S+PL AKL +GS +RF+ RLM
Sbjct: 20 SSPLTAKLLIGSHRFRARFARRLM 43
>12_01_0062 + 530180-532398,533123-533213,533398-533613
Length = 841
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -2
Query: 236 AAERACDYTEHFGVSVIMHCRTV*SLLNKYCTKLNTVV 123
+A +AC + +G+ +HC + S+L + +N++V
Sbjct: 199 SAVKACSISAQWGLGRQLHCLVIHSMLESNTSVMNSLV 236
>10_01_0209 +
2236530-2237301,2239196-2239297,2239535-2239716,
2240210-2240420,2240526-2240766,2240861-2241011,
2241116-2241424
Length = 655
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 85 VAHYSLYSEYIQCTTVLSFVQYLFKSDHT 171
VA+Y+ + Y CT V SF +L SD T
Sbjct: 98 VANYTAGAYYGDCTGVYSFQNFLDPSDAT 126
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 295 AICSASVVLRSKR-DAVFSPMLRNAPAITLNILEFLLLCTVELCDHF*TNIARNSTRL 125
AICS++ + +R FS +L + P LEF+LL + ELC I +NS L
Sbjct: 797 AICSSTPLKYLQRLIEAFSDLLESCPH-----LEFILLWSQELCKIHGNYIQQNSRAL 849
>11_06_0760 +
27017956-27018433,27018487-27019234,27023760-27024378,
27030755-27032440
Length = 1176
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 203 NVQCNRRRVPQHWREDCVSL*PQDDRRRT 289
+V CN + HW C SL P+ R T
Sbjct: 538 HVACNSDKDETHWLNVCKSLVPESGRDMT 566
>08_01_0755 - 7159471-7160124
Length = 217
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 243 RQCCGTRLRLH*TFWSFCYYAL 178
R CC T L+ SFCYY L
Sbjct: 52 RSCCDTALQADRDGSSFCYYHL 73
>07_03_0871 -
22183149-22183232,22183706-22183964,22184012-22184091,
22184308-22184667,22184757-22184900,22184986-22185141,
22185236-22185401,22185480-22185512,22186188-22186270,
22186341-22186443,22186540-22186628
Length = 518
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 28 VELRTLKVFLANRAAVSPIVAHYSLYSEYIQCTTVLSFVQYLFKSDHTVLQCIITETPK 204
V+LR+ KV L + ++ + ++Y ++ +L S+ + CI+TE PK
Sbjct: 430 VKLRSRKVILIAVVSRFLLIPAFYYTAKYSDQGWMIMLTSFLGLSNGYLTVCILTEAPK 488
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -1
Query: 300 PARFVLRLSSCGQRETQSSRQCCGTRLRLH*TFWSFC 190
PAR S G + S +CCG+ + WS C
Sbjct: 238 PARAAAGPPSTGSSTSMSRARCCGSACGTRRSTWSPC 274
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 209 EHFGVSVIMHCRTV*SLLNKYCTKLNTVVHCIYSE 105
E FG+ + C T SLL K +L +HC+ E
Sbjct: 1141 EEFGLDQSLSC-TENSLLKKQHARLGRALHCLSQE 1174
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 55 LANRAAVSPIVAHYSLYSEYIQCTTVLSFVQYLFKSDHTVLQCII 189
+ R SPI Y++YS I C+T + + F + L C+I
Sbjct: 80 ILERKCSSPINV-YAIYSYTIHCSTQAENICFWFIQNSPYLICVI 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,643,080
Number of Sequences: 37544
Number of extensions: 131624
Number of successful extensions: 294
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -