Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H02
         (318 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   2.8  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   3.6  
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    22   4.8  
AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative odorant-b...    22   6.4  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    21   8.4  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    21   8.4  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    21   8.4  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 200 QNVQCNRRRVPQHWREDC 253
           + + C+R R P H + DC
Sbjct: 200 KKITCHRCRKPGHMKRDC 217


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 200 QNVQCNRRRVPQHWREDCVSL*PQDDRRRTNRAG 301
           + V+C R     HW  DC S  P D +    R G
Sbjct: 658 ERVRCYRCLELGHWAHDCRS--PDDRQNMCIRCG 689


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 154 TNIARNSTRLCTVYIQNINYSAPL 83
           TN + NS R C   + N+N ++ +
Sbjct: 309 TNPSNNSDRFCLGQLSNVNRNSTI 332


>AJ618920-1|CAF01999.1|  204|Anopheles gambiae putative
           odorant-binding protein OBPjj4 protein.
          Length = 204

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -1

Query: 315 LLELCPARFVLRLSSCGQRETQSSRQCCGTRLRLH 211
           L E CP     +   C Q + +  + C    LR H
Sbjct: 162 LFEQCPTNVWTQKDGCTQLKDKIKKGCAYFALRKH 196


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 242 ANAAERACDYTEHFGVSVIMH 180
           ANA++  C  T   G  +I H
Sbjct: 281 ANASDYFCSSTSSVGFKIIFH 301


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 242 ANAAERACDYTEHFGVSVIMH 180
           ANA++  C  T   G  +I H
Sbjct: 281 ANASDYFCSSTSSVGFKIIFH 301


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 6   RQTCTNISRVENLESISSEPS 68
           R  CTNI    + E ISSE S
Sbjct: 133 RVNCTNIPPDTSSEEISSEMS 153


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,772
Number of Sequences: 2352
Number of extensions: 6350
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21181083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)