Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H02
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z83113-1|CAB05543.1|  733|Caenorhabditis elegans Hypothetical pr...    26   5.1  
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    26   5.1  
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    26   5.1  
AF016513-1|AAB69446.1|  733|Caenorhabditis elegans Ce-LEA protein.     26   5.1  
AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical ...    26   6.8  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    26   6.8  

>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -3

Query: 199 EFLLLCTVELCDHF*TNIARNSTRLCTVYIQNINYSAPL*AKLRLGSLEILSRFSTRLMF 20
           E+LL+C +  C+   + ++ N  RL T Y Q++  SA L   L        +RF+  L  
Sbjct: 246 EYLLMCVLIFCNPSLSQLSENGRRLLTSY-QHLYSSALLQYCLLTYEKAGPARFAELLGI 304

Query: 19  VHV 11
            HV
Sbjct: 305 CHV 307


>Z83113-1|CAB05543.1|  733|Caenorhabditis elegans Hypothetical
           protein K08H10.1 protein.
          Length = 733

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 216 IAGAFRSIGEKTASLFDRKTTDAEQIAQDKVREA 317
           + GAF ++GEK    +D      +Q A DKV  A
Sbjct: 29  VVGAFNTVGEKIGGAYD----STKQYASDKVSAA 58


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
           protein B0412.3 protein.
          Length = 1107

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 256 DAVFSPMLRNAPAITLNILEFLLLCTVELCD 164
           D + +  +++A +I ++ +EFL+   V LCD
Sbjct: 889 DHILNASIQSAASIVISSVEFLMADVVTLCD 919


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 82  IVAHYSLYSEYIQCTTVLSFVQYLFKSDHTVLQCIIT 192
           IV HY    +++      S++Q+L K+ + +  C +T
Sbjct: 254 IVMHYIKILKFVLIAIFQSYIQFLKKTKYILYNCYLT 290


>AF016513-1|AAB69446.1|  733|Caenorhabditis elegans Ce-LEA protein.
          Length = 733

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 216 IAGAFRSIGEKTASLFDRKTTDAEQIAQDKVREA 317
           + GAF ++GEK    +D      +Q A DKV  A
Sbjct: 29  VVGAFNTVGEKIGGAYD----STKQYASDKVSAA 58


>AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.5 protein.
          Length = 345

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -3

Query: 199 EFLLLCTVELCDHF*TNIARNSTRLCTVYIQNINYSAPL 83
           E+LL+C +  C+   +++++N   L T Y QN+ YS+ L
Sbjct: 246 EYLLMCVLIFCNPNLSDVSKNGKILLTSY-QNL-YSSVL 282


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 221 CDYTEHFGVSVIMHCR 174
           C YT+H  +S+ M+CR
Sbjct: 110 CFYTKHQSISIFMNCR 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,038,997
Number of Sequences: 27780
Number of extensions: 134792
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)