Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H02
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   6.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    20   8.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    20   8.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    20   8.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    20   8.3  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 313 SRTLSCAICSASVVLRSKRDAVFSPMLRNAPAI 215
           S  ++C ICS SV   ++   V   M+  A ++
Sbjct: 8   SLLITCLICSPSVHCGTRPSFVSDEMIATAASV 40


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 43   LKVFLANRAAVSPIVA 90
            +K+F+AN   V P+VA
Sbjct: 1578 MKIFMANLNLVVPVVA 1593


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 171 SSTVHNNRNSKMFS 212
           + T+HNN N K ++
Sbjct: 320 NKTIHNNNNYKNYN 333


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 171 SSTVHNNRNSK 203
           ++T+HNN N K
Sbjct: 309 NNTIHNNNNYK 319


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 171 SSTVHNNRNSK 203
           ++T+HNN N K
Sbjct: 320 NNTIHNNNNYK 330


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 171 SSTVHNNRNSK 203
           ++T+HNN N K
Sbjct: 320 NNTIHNNNNYK 330


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 171 SSTVHNNRNSK 203
           ++T+HNN N K
Sbjct: 309 NNTIHNNNNYK 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,492
Number of Sequences: 438
Number of extensions: 1557
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)