Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_H01
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655...    33   0.11 
10_08_0127 - 15010125-15011068,15011328-15011835                       28   3.1  
12_02_0343 - 17748882-17753396                                         28   4.0  
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455...    27   7.1  
01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641...    27   9.3  

>04_04_1079 -
           30663919-30665044,30665143-30665298,30665405-30665563,
           30665640-30665770,30666230-30666315,30666607-30666673,
           30666944-30667023,30667173-30667260,30667380-30667428,
           30667516-30667608,30667725-30667808,30667986-30668044,
           30668293-30668327,30668416-30668718,30669111-30669275,
           30669701-30669780,30670932-30671003,30671143-30671234,
           30671359-30671433,30671552-30671688,30671763-30671890,
           30671942-30672033,30672473-30672808
          Length = 1230

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = +1

Query: 160 DDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTPAVY-LGPVSFKRKDL 336
           DDN Y    ++ C V +  SD ++   + K+K  F K +   K P  Y +   S +R D+
Sbjct: 518 DDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPPRFYEVTNHSKERPDV 577

Query: 337 TNRQSPNEIVKKISKPNLTVTQQYIPTKYASELNKI 444
                   ++  I+    T+  +     Y+    +I
Sbjct: 578 WIESPDKSVIISITSDIRTIKSEVFAAPYSLRFPRI 613


>10_08_0127 - 15010125-15011068,15011328-15011835
          Length = 483

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 202 VKSNASDPQIQDSIKKVKNWFSKADKKPKTPAVYLGPVSFKRKD 333
           V+  ASDP I+D ++ V+  F++ D  P T A   G  S K +D
Sbjct: 260 VRVTASDPPIEDPLEGVRELFAEVD-DPNTTAPPGGNGSDKPED 302


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 244 KKVKNWFSKADKKPKTPAVYLGPVSFKRKDLTNRQSPNEIVKKISKPNLTV 396
           K  K      +K+PKT    + P  F RKDL    +   ++ K    +LTV
Sbjct: 226 KNAKTQCIDLEKRPKTTPTIIEPELFGRKDLKRIVADEIMIGKYRDNDLTV 276


>02_05_0869 -
           32344821-32344916,32345255-32345347,32345418-32345551,
           32345863-32346013,32346337-32346407,32346683-32346828,
           32347172-32347221,32347552-32347628,32347716-32347776,
           32347859-32347912,32347999-32348058,32348491-32348624,
           32349740-32350418
          Length = 601

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 76  FSSDCLAFITSSFSCLFSEMTISLV 2
           F    +AF+T S++C+F+   +SL+
Sbjct: 374 FHGYAIAFLTDSYNCVFASSAVSLL 398


>01_06_0877 +
           32662978-32663179,32663718-32663951,32664080-32664143,
           32664250-32664379,32664483-32664624,32664806-32665063,
           32665168-32665252,32665609-32665711,32666281-32666406,
           32666476-32666589,32666769-32666887,32666993-32667080,
           32667154-32667246,32667325-32667414,32667522-32667641,
           32667782-32667877
          Length = 687

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 158 LILPFLTLSVLKVSRFKGQSWQICVYRFLI*LFSIHYQ 45
           ++LP+ T + L  S  +G S Q+     L+ L  IHY+
Sbjct: 261 VLLPYYTFNYLVSSNAEGASSQLADNSLLVLLILIHYR 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,923,103
Number of Sequences: 37544
Number of extensions: 167426
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)