Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_H01
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46934-13|CAI46581.1| 68|Caenorhabditis elegans Hypothetical p... 31 0.39
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr... 30 0.69
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh... 30 0.69
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p... 30 0.69
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 29 1.2
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 29 1.2
Z75550-4|CAA99923.2| 335|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 28 3.7
U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 27 6.4
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 27 6.4
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 27 8.4
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 27 8.4
Z50741-3|CAA90611.1| 212|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 27 8.4
AF025465-3|AAB71027.2| 380|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z46934-13|CAI46581.1| 68|Caenorhabditis elegans Hypothetical
protein ZK1320.13 protein.
Length = 68
Score = 31.1 bits (67), Expect = 0.39
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 124 LSTERVKNGNIKDDNMYYGSEVNSCA-VKSNASDPQIQDSIKKVKNWF 264
+ST I +N GS N+ + N DPQ+QD+ KK++N F
Sbjct: 1 MSTSSGATTTIPQENGAAGSTSNNQEEIDINLEDPQVQDAAKKIQNVF 48
>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
protein F19H8.1 protein.
Length = 1229
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +1
Query: 175 YGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTPAVYLGPVSFKRKDLTNRQSP 354
YGS + C+V S++ + +++ + S++++ PK P L F+++ + +P
Sbjct: 187 YGSHTSLCSVSSDSEGEEAIHNVRSGTHTESESEEDPKAPRSGLATSHFQQRVINVSNAP 246
Query: 355 NEIVKK 372
+K+
Sbjct: 247 PVSLKR 252
>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1229
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +1
Query: 175 YGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTPAVYLGPVSFKRKDLTNRQSP 354
YGS + C+V S++ + +++ + S++++ PK P L F+++ + +P
Sbjct: 187 YGSHTSLCSVSSDSEGEEAIHNVRSGTHTESESEEDPKAPRSGLATSHFQQRVINVSNAP 246
Query: 355 NEIVKK 372
+K+
Sbjct: 247 PVSLKR 252
>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1230
Score = 30.3 bits (65), Expect = 0.69
Identities = 14/66 (21%), Positives = 34/66 (51%)
Frame = +1
Query: 175 YGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTPAVYLGPVSFKRKDLTNRQSP 354
YGS + C+V S++ + +++ + S++++ PK P L F+++ + +P
Sbjct: 187 YGSHTSLCSVSSDSEGEEAIHNVRSGTHTESESEEDPKAPRSGLATSHFQQRVINVSNAP 246
Query: 355 NEIVKK 372
+K+
Sbjct: 247 PVSLKR 252
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 115 LETLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTP 294
LE + +R KN D+N +E +K+ +++S+KK +N +K + + T
Sbjct: 903 LELAAEDRKKNERRYDENDKRATEEFDKNLKAQKEIKDLKNSLKKAENKATKEETRATTL 962
Query: 295 AVYLGPVSFKRK 330
V L + K K
Sbjct: 963 QVQLNELEEKAK 974
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 115 LETLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTP 294
LE + +R KN D+N +E +K+ +++S+KK +N +K + + T
Sbjct: 903 LELAAEDRKKNERRYDENDKRATEEFDKNLKAQKEIKDLKNSLKKAENKATKEETRATTL 962
Query: 295 AVYLGPVSFKRK 330
V L + K K
Sbjct: 963 QVQLNELEEKAK 974
>Z75550-4|CAA99923.2| 335|Caenorhabditis elegans Hypothetical
protein T22C1.6 protein.
Length = 335
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 124 LSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKK 282
L TE+ +++ + Y SE+ SC KSN + + +D I +V + +K+
Sbjct: 221 LKTEKALREQVQEYSAKY-SELTSCLSKSNEAFDKFKDEISRVNKKCMQVEKE 272
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 142 KNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKP 285
K N KD +V V+S + PQ++ ++KV+ + KKP
Sbjct: 377 KKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPVAPVSKKP 424
>U80032-5|AAB53878.1| 552|Caenorhabditis elegans Hypothetical
protein C32E12.1 protein.
Length = 552
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 205 KSNASDPQIQDSIKKVKNWFSKADKKPK-TPAVYLGPVSFKRKDLTNRQ-SPNEIVKKIS 378
K + SDP IKK K DKKPK + P + K K++ ++ P ++ K
Sbjct: 59 KGSKSDPNAVAKIKKNKKDKKSKDKKPKDKKSKEKKPKAAKSKEVKSKDVKPKDVKSKDE 118
Query: 379 K 381
K
Sbjct: 119 K 119
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 250 VKNWFSKADKKPKTPAVY--LGPVSFKRKDLTNRQSPNEIVKKISKPNLTVTQQY 408
+ N F + KK KT +++ LG S K+K+ ++ +E ++KI K L +++
Sbjct: 1 MSNLFEEGQKKKKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEF 55
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 250 VKNWFSKADKKPKTPAVY--LGPVSFKRKDLTNRQSPNEIVKKISKPNLTVTQQY 408
+ N F + KK KT +++ LG S K+K+ ++ +E ++KI K L +++
Sbjct: 1 MSNLFEEGQKKKKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEF 55
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 26.6 bits (56), Expect = 8.4
Identities = 22/102 (21%), Positives = 45/102 (44%)
Frame = +1
Query: 115 LETLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTP 294
L+ S ER K + ++ + + A ++ A Q++ IK+++ + +K
Sbjct: 846 LQKCSEERNKLQSKLNELGTHRVSLGEAAAQAGAFAEQLETKIKEIQECITAISQKRNED 905
Query: 295 AVYLGPVSFKRKDLTNRQSPNEIVKKISKPNLTVTQQYIPTK 420
L FK+ DLT S E KK ++ + + ++ + K
Sbjct: 906 ---LPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQK 944
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 26.6 bits (56), Expect = 8.4
Identities = 22/102 (21%), Positives = 45/102 (44%)
Frame = +1
Query: 115 LETLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTP 294
L+ S ER K + ++ + + A ++ A Q++ IK+++ + +K
Sbjct: 832 LQKCSEERNKLQSKLNELGTHRVSLGEAAAQAGAFAEQLETKIKEIQECITAISQKRNED 891
Query: 295 AVYLGPVSFKRKDLTNRQSPNEIVKKISKPNLTVTQQYIPTK 420
L FK+ DLT S E KK ++ + + ++ + K
Sbjct: 892 ---LPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQK 930
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 26.6 bits (56), Expect = 8.4
Identities = 22/102 (21%), Positives = 45/102 (44%)
Frame = +1
Query: 115 LETLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKTP 294
L+ S ER K + ++ + + A ++ A Q++ IK+++ + +K
Sbjct: 832 LQKCSEERNKLQSKLNELGTHRVSLGEAAAQAGAFAEQLETKIKEIQECITAISQKRNED 891
Query: 295 AVYLGPVSFKRKDLTNRQSPNEIVKKISKPNLTVTQQYIPTK 420
L FK+ DLT S E KK ++ + + ++ + K
Sbjct: 892 ---LPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQK 930
>Z50741-3|CAA90611.1| 212|Caenorhabditis elegans Hypothetical
protein F55G7.3 protein.
Length = 212
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 121 TLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKNWFSKADKKPKT 291
T +E+++ +K+ + S+V+ CA K P Q K +N + + + P T
Sbjct: 34 TKISEKMRKSQLKERRLRKQSKVSKCAKKLKRKVPTRQIVTNKPENLYKEHRQGPNT 90
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 15 VISENKQENELVMNAKQSDEKPIDTNLPRL 104
V++ENK+ENEL KQ D + +D R+
Sbjct: 166 VLTENKKENEL-RKCKQKDGESVDDFYQRI 194
>AF025465-3|AAB71027.2| 380|Caenorhabditis elegans Hypothetical
protein K02E7.6 protein.
Length = 380
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 103 CPLNLETLSTERVKNGNIKDDNMYYGSEVNSCAVKSNASDPQIQDSIKKVKN 258
CP +E +S + + D ++ + + AV PQ D++ VKN
Sbjct: 59 CPATMEIISIAKEAGDVLSDQSLDFLDQALKNAVIPQGYSPQGSDALSTVKN 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,375,244
Number of Sequences: 27780
Number of extensions: 176230
Number of successful extensions: 574
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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