Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G24
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0376 - 3320621-3321151 32 0.26
01_07_0348 + 42910560-42910880 31 0.59
11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772 28 5.5
03_04_0089 - 17217235-17217461,17218298-17218418 28 5.5
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 28 5.5
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212... 28 5.5
01_05_0657 + 24034198-24036306 28 5.5
11_06_0722 - 26678873-26680843 27 7.3
11_06_0368 + 22756988-22758205 27 7.3
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 27 9.7
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 27 9.7
>08_01_0376 - 3320621-3321151
Length = 176
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 378 CLSNLGLVEPKVPDGSPQAPDPEPQPRDVA 289
CLS LGL P +PD P P P P +A
Sbjct: 33 CLSALGLAAPPLPDEHPAYAPPPPPPASMA 62
>01_07_0348 + 42910560-42910880
Length = 106
Score = 31.1 bits (67), Expect = 0.59
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +3
Query: 246 RTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPPIPNYSGIENAEK*SRLNIGVGL 425
R V +L MLM AAGA GG SVP + G+ AE+ + +G
Sbjct: 15 RIVALLLLLLMLMLRAAAAAGATTTGAGGGPSGGSVPAGGDAGGVAPAERGGVAAVEIGG 74
Query: 426 IVLNKYFPPVANSRRASPAPAK 491
+V+ ++R A P A+
Sbjct: 75 VVVVVAAAAAGSARFAPPLAAR 96
>11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772
Length = 109
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 240 MERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQAPSVPP 359
+++T Q+ RTQ L+ G L+Q S P++PP
Sbjct: 51 LDKTYQVHDRTQNLVARTESLMGRLNQVFASSLPGPALPP 90
>03_04_0089 - 17217235-17217461,17218298-17218418
Length = 115
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 160 TTQRHRCCLMSLSVNCI 110
+T RH CL+SLS++C+
Sbjct: 42 STNRHTLCLLSLSISCL 58
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 198 KVGRTLMPMPRHKLMERTVQMLTRTQMLMRPLHHAAGALDQELGGSHQA 344
K + P P KL+ R ++ R+ RP+ HAA + QE+G S A
Sbjct: 438 KSSKARRPQPLIKLVMRRLESSFRS--FSRPVLHAAARVVQEMGKSRAA 484
>01_06_1530 -
38019997-38020011,38020705-38020867,38021126-38021211,
38021297-38022642,38022980-38023193
Length = 607
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 187 GIGVQRATQTTQRHRCCLMSLSVNCIIRSWHVILTL 80
G+GV A +R R L SV+ ++ W V+L L
Sbjct: 25 GVGVATAAAAGRRRRRRLYGFSVSLVVACWVVLLLL 60
>01_05_0657 + 24034198-24036306
Length = 702
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 142 CCLMSLSVNCIIRSWHVILTLCQCHGEDRTEYQESDGVHVGRRCSL 5
C + + + II +WH+ TLC+ E+R + + CSL
Sbjct: 509 CTTVRTTTHTII-AWHIATTLCEVEDEERHRMDSTTTNYKDVACSL 553
>11_06_0722 - 26678873-26680843
Length = 656
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 112 IIRSWHVILTLCQCHGEDR 56
II +WH+ TLC+ ED+
Sbjct: 482 IIMAWHIATTLCEVEDEDQ 500
>11_06_0368 + 22756988-22758205
Length = 405
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 360 LVEPKVPDGSPQAPDPEPQP 301
L +PK P P+ P PEP+P
Sbjct: 12 LPKPKPPKPKPKPPKPEPEP 31
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 470 RITCACEILPCNCRKIYLLSVINN 541
+ITC C C CR +Y +S+ N
Sbjct: 71 KITCPCFQRRCTCRGMYQMSINEN 94
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 387 RSQCLSNLGLVEPKVPDGSPQAPDPEPQPRDVA 289
R L GL + ++ + + PDP+P DVA
Sbjct: 56 RRSFLEKKGLTKEEIDEAFRRVPDPQPNSTDVA 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,530,773
Number of Sequences: 37544
Number of extensions: 307494
Number of successful extensions: 1236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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