Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G24
         (542 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S81242-1|AAB36005.1|   58|Homo sapiens EWS-CHN fusion gene protein.    33   0.65 
AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens ...    33   0.85 
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    32   1.1  
AL121845-12|CAI21885.1|  589|Homo sapiens zinc finger and BTB do...    29   8.0  
AK131482-1|BAD18627.1|  589|Homo sapiens protein ( Homo sapiens ...    29   8.0  
AB058761-1|BAB47487.2| 2469|Homo sapiens KIAA1858 protein protein.     29   8.0  

>S81242-1|AAB36005.1|   58|Homo sapiens EWS-CHN fusion gene protein.
          Length = 58

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 393 SQRSQCLSNLGLVEPKVPDGSPQAPDPEPQP 301
           SQ SQ  S+ G  +P   +GSP +P PEP P
Sbjct: 1   SQYSQQSSSYGQQKPTAEEGSPASPGPEPGP 31


>AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38312 fis, clone FCBBF3021506. ).
          Length = 134

 Score = 32.7 bits (71), Expect = 0.85
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = -2

Query: 295 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 116
           C  R  +CV + +C  + + +C+ + + VR  ++C+ + V         H C  + + V 
Sbjct: 9   CMCRWCLCVCIYMCVCVPVCMCVYVCVYVRICVICVCVCV-----FVCAHMCSCVFVYV- 62

Query: 115 CIIRSWHVILTLCQC 71
           CI    +V + +C C
Sbjct: 63  CICVCLYVCVFVCVC 77


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = -2

Query: 283 MSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVNCIIR 104
           +S+CV VS+C  L + LC+ + +SV    VC+ + +  +      + C  + +SV+  + 
Sbjct: 79  VSVCVYVSVCMYLCVFLCVCVYVSVS---VCLCVYLHISVYLCV-YVCICVCVSVSLCV- 133

Query: 103 SWHVILTLCQC 71
           S    L+LC C
Sbjct: 134 SVCACLSLCVC 144



 Score = 29.5 bits (63), Expect = 8.0
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -2

Query: 283 MSICVRVSICTVLSISLCLGIGISVRPTL-VCIGIGVQRATQTTQRHRCCLMSLSVNCII 107
           +S+C+ + +C  + +S+C+ I +SV   + VC+ + V           C  + +S+ C+ 
Sbjct: 13  VSVCLYLYVCVCICVSVCVCICVSVCVCICVCVSVFVCVCICV-----CVCVCVSM-CVS 66

Query: 106 RSWHVILTLCQC 71
            S  V L LC C
Sbjct: 67  ISVCVYLCLCVC 78


>AL121845-12|CAI21885.1|  589|Homo sapiens zinc finger and BTB
           domain containing 46 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 84  VNITCHERIIQLTLRDMRQHRCLCVVCVAL 173
           + IT H R +   L + RQH  LC VCV +
Sbjct: 8   MEITSHYRHLLRELNEQRQHGVLCDVCVVV 37


>AK131482-1|BAD18627.1|  589|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16656 fis, clone TESTI4038779, weakly  similar
           to Rattus norvegicus zinc finger protein RIN ZF (RINZF).
           ).
          Length = 589

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 84  VNITCHERIIQLTLRDMRQHRCLCVVCVAL 173
           + IT H R +   L + RQH  LC VCV +
Sbjct: 8   MEITSHYRHLLRELNEQRQHGVLCDVCVVV 37


>AB058761-1|BAB47487.2| 2469|Homo sapiens KIAA1858 protein protein.
          Length = 2469

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 206  PHLGMHRDRGSKSDANDAKAPVLSHVPQRQLYNTLVARNIDPLPVPRRRSHRVSGK*R 33
            P L  H+ R  +        P  + +P +Q    L A+   P   PR++SHRVSGK R
Sbjct: 1001 PGLSRHKARKHRPHPGAPAEPSPAALPAQQPLEPL-AQKCQP---PRKKSHRVSGKER 1054


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,766,702
Number of Sequences: 237096
Number of extensions: 1548463
Number of successful extensions: 5738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5676
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)