Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G24
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 30 0.94
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 30 0.94
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 30 0.94
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen prot... 28 5.0
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z54306-2|CAA91088.1| 260|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 8.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 8.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 8.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 27 8.7
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 99 HERIIQLTLRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQM 278
+E I+ ++++++ ++ ++ P+P TKV +MPM ++ E + TR +
Sbjct: 195 NEPIVPEVMKEIKEIETWILMLLSSPVPVPGKTKVQIEVMPMDLSQVFEFALPDHTRFTL 254
Query: 279 LMRPLH 296
+ PLH
Sbjct: 255 IDFPLH 260
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 99 HERIIQLTLRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQM 278
+E I+ ++++++ ++ ++ P+P TKV +MPM ++ E + TR +
Sbjct: 195 NEPIVPEVMKEIKEIETWILMLLSSPVPVPGKTKVQIEVMPMDLSQVFEFALPDHTRFTL 254
Query: 279 LMRPLH 296
+ PLH
Sbjct: 255 IDFPLH 260
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 99 HERIIQLTLRDMRQHRCLCVVCVAL*TPIPMHTKVGRTLMPMPRHKLMERTVQMLTRTQM 278
+E I+ ++++++ ++ ++ P+P TKV +MPM ++ E + TR +
Sbjct: 195 NEPIVPEVMKEIKEIETWILMLLSSPVPVPGKTKVQIEVMPMDLSQVFEFALPDHTRFTL 254
Query: 279 LMRPLH 296
+ PLH
Sbjct: 255 IDFPLH 260
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 399 IISQRSQCLS-NLGLVEPKVPDGSPQAPDPEPQP 301
I + S+C+ G P+ PDG+P AP P QP
Sbjct: 125 IAASTSECIPCPAGAPGPQGPDGAPGAPGPSGQP 158
>AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen protein
54 protein.
Length = 281
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 351 PKVPDGSPQAPDPEPQP 301
P+ PDG+P AP P+ QP
Sbjct: 139 PQGPDGAPGAPGPDGQP 155
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 363 GLVEPKVPDGSPQAPDPEPQP 301
G P PDG+P AP P+ QP
Sbjct: 142 GEAGPAGPDGAPGAPGPDGQP 162
>Z54306-2|CAA91088.1| 260|Caenorhabditis elegans Hypothetical
protein B0457.4 protein.
Length = 260
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 431 LEQVFSTSCKLTPRITCACEILPC-NCRKIYLLSVINN 541
++Q ++ S +T C CEIL C NC K + S I +
Sbjct: 55 MDQRWAESTVVTNETHCLCEILTCRNCNKSHKRSRIEH 92
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 327 GGSHQAPSVPPIPNYSG 377
GG ++AP PP P+Y+G
Sbjct: 48 GGGYEAPPPPPPPSYAG 64
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 8.7
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = -2
Query: 295 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 116
C G ++ C+ S+ S+++C + T C ++ + R C SLSVN
Sbjct: 2031 CKGLINECLDRSLNDCHSLAVCKDLPNGY--TCQCPINAKDQSPDPRKPGRIC--SLSVN 2086
Query: 115 -CIIRSWHVILTLCQCHGED-------RTEYQESDGVHVGRRCSLV 2
C S + C E+ R Y + D H G RCS +
Sbjct: 2087 ECANPSLNSCSAFADCFDEENGYRCRCRNGYHDDDPAHPGHRCSFM 2132
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.7
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = -2
Query: 295 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 116
C G ++ C+ S+ S+++C + T C ++ + R C SLSVN
Sbjct: 2615 CKGLINECLDRSLNDCHSLAVCKDLPNGY--TCQCPINAKDQSPDPRKPGRIC--SLSVN 2670
Query: 115 -CIIRSWHVILTLCQCHGED-------RTEYQESDGVHVGRRCSLV 2
C S + C E+ R Y + D H G RCS +
Sbjct: 2671 ECANPSLNSCSAFADCFDEENGYRCRCRNGYHDDDPAHPGHRCSFM 2716
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 8.7
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = -2
Query: 295 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 116
C G ++ C+ S+ S+++C + T C ++ + R C SLSVN
Sbjct: 2031 CKGLINECLDRSLNDCHSLAVCKDLPNGY--TCQCPINAKDQSPDPRKPGRIC--SLSVN 2086
Query: 115 -CIIRSWHVILTLCQCHGED-------RTEYQESDGVHVGRRCSLV 2
C S + C E+ R Y + D H G RCS +
Sbjct: 2087 ECANPSLNSCSAFADCFDEENGYRCRCRNGYHDDDPAHPGHRCSFM 2132
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.7
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = -2
Query: 295 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 116
C G ++ C+ S+ S+++C + T C ++ + R C SLSVN
Sbjct: 2615 CKGLINECLDRSLNDCHSLAVCKDLPNGY--TCQCPINAKDQSPDPRKPGRIC--SLSVN 2670
Query: 115 -CIIRSWHVILTLCQCHGED-------RTEYQESDGVHVGRRCSLV 2
C S + C E+ R Y + D H G RCS +
Sbjct: 2671 ECANPSLNSCSAFADCFDEENGYRCRCRNGYHDDDPAHPGHRCSFM 2716
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.7
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Frame = -2
Query: 295 CSGRMSICVRVSICTVLSISLCLGIGISVRPTLVCIGIGVQRATQTTQRHRCCLMSLSVN 116
C G ++ C+ S+ S+++C + T C ++ + R C SLSVN
Sbjct: 2615 CKGLINECLDRSLNDCHSLAVCKDLPNGY--TCQCPINAKDQSPDPRKPGRIC--SLSVN 2670
Query: 115 -CIIRSWHVILTLCQCHGED-------RTEYQESDGVHVGRRCSLV 2
C S + C E+ R Y + D H G RCS +
Sbjct: 2671 ECANPSLNSCSAFADCFDEENGYRCRCRNGYHDDDPAHPGHRCSFM 2716
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 363 GLVEPKVPDGSPQAPDPEPQP 301
G P PDG P AP P+ QP
Sbjct: 204 GPAGPPGPDGQPGAPGPDGQP 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,126
Number of Sequences: 27780
Number of extensions: 231587
Number of successful extensions: 908
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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