Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G23
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 0.72
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 1.7
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 25 2.9
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 25 2.9
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 3.8
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 24 6.7
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 24 6.7
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 24 6.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 6.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 23 8.8
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 23 8.8
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 23 8.8
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 23 8.8
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 0.72
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 13 RRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKTESGIR 162
R ++ ++RE NR T+ G + HGS LT+TG + ++
Sbjct: 17 RASSNTHLSREGTNRSSNVTRTV----SGRKSNHGSSLTDTGESDQLSLK 62
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 1.7
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 14 VEKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQ 193
VEKQ +++E+L+ + + +E ++ +++ A + + + K +EVQ
Sbjct: 664 VEKQNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAEHDREIFYEREKQRKEVQ 723
Query: 194 KKVHEAATKQ*RA 232
++ HE A K +A
Sbjct: 724 ERKHEQAIKDKKA 736
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 25.0 bits (52), Expect = 2.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 11 DVEKQATALHEKLQTAIQNTLKES 82
D+EKQ + H++ Q+++ + L+ES
Sbjct: 16 DLEKQQSNHHDRYQSSVSSELEES 39
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 2.9
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 17 EKQATALHEKLQTAIQNTLKE--SQ-NLAKEVGVNMDQTSQKLAPKLKAAYD 163
EKQ HEK+ ++ LKE SQ N AK++ ++ +Q + K+ ++
Sbjct: 234 EKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISALSANQDILDKMNDEFN 285
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 44 KLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAP 142
K Q ++ +T + K GVN DQT Q AP
Sbjct: 275 KSQASVSSTASTTGQTVK--GVNADQTQQPTAP 305
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 23.8 bits (49), Expect = 6.7
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Frame = +1
Query: 16 RETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKTESGIR*L--CXXXXXX 189
RE + RE E K + E GE + Q G S IR + C
Sbjct: 50 REKRAEMRREKKRLRKEERKRKIEAGEVVKSQ--KKRIRLGKVVPSSIRIVLDCAFDDLM 107
Query: 190 XXXXXXXCHQAVTRSHRPARCSLSPIQ-FLYNY 285
Q VTR H R +L P++ F N+
Sbjct: 108 NDKEINSLCQQVTRCHSANRTALHPVELFATNF 140
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 86 NLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEE 187
+L K + +MD+ SQKLA + + +H +E
Sbjct: 268 SLQKLIDASMDKNSQKLARLIFSLLYQITQHEQE 301
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 34 ITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETG 138
I+ E+ ++ + T G+P R++HG+ T G
Sbjct: 315 ISWESHSQDGDRTTGQPRHANNGRKKHGNFWTIQG 349
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect = 6.7
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 74 KESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEV 190
K++ K+ G+N +QTS + P ++ D + + ++V
Sbjct: 1583 KKTGKARKDKGINNNQTSPQNKPSKESLKSDTISNEKKV 1621
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 158 YDDFVKHAEEVQKKVHE 208
YDDF EEV+++V E
Sbjct: 187 YDDFEDEEEEVEEQVEE 203
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 23.4 bits (48), Expect = 8.8
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 2 HEADVEKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHA 181
HE + + A + + + QN+ K + AKE + DQ ++ K + D+ K
Sbjct: 245 HEGLLAAREKAREARRRRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQ--IDEIEKGQ 302
Query: 182 EEV-QKKVHEAAT 217
+EV ++ V E T
Sbjct: 303 KEVDEEPVSEPTT 315
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 23.4 bits (48), Expect = 8.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 35 LHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHE 208
+H+ L I N + + Q+ + ++ Q PKL A Y + E + KKV +
Sbjct: 132 MHKSLNDEI-NYILDDQDACLKPKPSVAQLFLSWLPKLSAVYGRYCVIQENIGKKVEK 188
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/57 (19%), Positives = 27/57 (47%)
Frame = +2
Query: 14 VEKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAE 184
V K T + +++ + K+ +NL K +G + + + K + +DF ++ +
Sbjct: 330 VNKGVTGVASQVRKPVGKLEKKFENLEKSIGDTLKSSIRSSPKSKKRSREDFEENED 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,680
Number of Sequences: 5004
Number of extensions: 14820
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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