Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G23
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 30 0.49
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 29 0.65
11_06_0374 + 22877325-22878500,22879898-22880014,22880131-228803... 29 1.1
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 29 1.1
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 28 1.5
03_05_0437 - 24293236-24294120 28 1.5
07_03_1533 + 27523811-27524710 28 2.0
12_02_1067 - 25792295-25793167 27 2.6
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 27 2.6
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 27 4.6
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 27 4.6
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 26 6.1
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 26 6.1
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 26 6.1
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 26 6.1
05_05_0091 + 22319411-22320901 26 6.1
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555... 26 6.1
01_06_0241 - 27813076-27813622,27813695-27814125 26 8.0
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 26 8.0
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/61 (24%), Positives = 33/61 (54%)
Frame = +2
Query: 56 AIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEEVQKKVHEAATKQ*RAL 235
A+++ L E++++AKE+ N+ + + APK + DF+ E ++ ++ A+
Sbjct: 386 ALKSYLNENESIAKELETNLRKLMETQAPKKQEDEGDFLSDLPEESLATETSSEEELAAV 445
Query: 236 I 238
I
Sbjct: 446 I 446
>12_02_1015 +
25331667-25332169,25333305-25333406,25333775-25333919,
25334002-25334186,25334297-25334401,25334507-25334604,
25334686-25334924,25335030-25335123,25335190-25335275,
25335579-25335677,25335804-25335869
Length = 573
Score = 29.5 bits (63), Expect = 0.65
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 107 RRLPSPG-SGSPLVCSGWRFAASRVMR 30
RRLP G + S VC GWR A RV R
Sbjct: 108 RRLPPRGVAASAAVCRGWRGCARRVWR 134
>11_06_0374 +
22877325-22878500,22879898-22880014,22880131-22880322,
22880742-22880783
Length = 508
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 4 RGRRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDL 126
RG + E H E EP PG RR+HG ++
Sbjct: 305 RGEEAYVEPALGGEVRREHGEEVHVEPAPGGEVRREHGEEV 345
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 114 MLTPTSFARFWLSFSVFWMAVCSFSCNAVACF 19
M T+ + +WL++ AV +SC +ACF
Sbjct: 1 MAVDTTASEYWLNWRFMLCAVWVYSCMVLACF 32
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 10 RRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSD 123
R R+TSH + ++ A R + E + G+G R D
Sbjct: 230 RHRDTSHELLQDDARRRRADAEAEQQGGDGEVRDEYED 267
>03_05_0437 - 24293236-24294120
Length = 294
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 86 SGSPLVCSGWRFAASRVMRW 27
S +PLVC GWR AA+ W
Sbjct: 36 SAAPLVCRGWRRAAADPSLW 55
>07_03_1533 + 27523811-27524710
Length = 299
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 4 RGRRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSD 123
R RRR S R R HP +GE + G HG D
Sbjct: 172 RHRRRRRSRR-RRRRHRHHPGVREGEDDDSGGDDEDHGGD 210
>12_02_1067 - 25792295-25793167
Length = 290
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -2
Query: 107 RRLP--SPGSGSPLVCSGWRFAASRVMRW 27
RRLP + +PLVC WR AA W
Sbjct: 28 RRLPLDDVAAAAPLVCRSWRAAARDASLW 56
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 152 AAYDDFVKHAEEVQKKVHEAATKQ*RALIARR 247
A Y D K+ EE+Q + E +Q AL+ +R
Sbjct: 175 ALYPDIDKYEEEIQASIAETFRRQSEALVKKR 206
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +2
Query: 8 ADVEKQATALHEKLQTAIQNTLKESQNLAKEVGVNMDQTSQKLAPKLKAAYDDFVKHAEE 187
A +E++ +L K+ +QN L+ + + + Q + ++ K +A YD+F+++
Sbjct: 281 ASLEEEKDSLRAKI-AKLQNNLRMGLEIEQHL-----QRNARVLEKRQALYDEFMRNGLS 334
Query: 188 VQKKVH 205
+K+H
Sbjct: 335 TLQKLH 340
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 64 EHTKGEPEPGEGSRRQHGSDLTETGAKTESGI 159
E+ E GEGS GSD +E G + + +
Sbjct: 244 EYADESDEDGEGSSSDEGSDFSEDGDQEDESV 275
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 91 GEGSRRQHGSDLTETGAKTESG 156
G GS +HG+ TG K+ SG
Sbjct: 20 GSGSEAEHGNPREHTGGKSNSG 41
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 13 RRETSHRITREAANRHPEHTKGEPEP 90
+R++S ++TREA +H + + P P
Sbjct: 570 KRKSSKKVTREAVEQHTKSSSRAPTP 595
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +1
Query: 13 RRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTE 132
R+E + + + +N ++G P P G Q+ LT+
Sbjct: 476 RKEATEKYKKRKSNHQGNSSRGAPRPRYGQPMQYHQSLTQ 515
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 38 HEKLQTAIQNTLKESQNLAKEVGVNM 115
HE++ TAI L+ES+ + VG N+
Sbjct: 185 HEQIDTAIATALRESKPVYISVGCNL 210
>05_05_0091 + 22319411-22320901
Length = 496
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 71 VCSGWRFAASRVMRWLVSRRR 9
+ GWR AA R++ WL R
Sbjct: 405 LAEGWRSAAGRILAWLAPMAR 425
>04_03_0147 -
11853940-11854128,11854933-11855013,11855501-11855584,
11855663-11855735,11855888-11855949,11856246-11856327,
11857643-11858262
Length = 396
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 76 GEPEPGEGSRRQHGS 120
G PEP G RRQ GS
Sbjct: 139 GSPEPARGPRRQRGS 153
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +1
Query: 13 RRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTE 132
R+ET+ + +N ++G P P G Q+ +T+
Sbjct: 283 RKETTEEYKKRRSNHQGNSSRGAPRPRFGQPMQYHQSVTQ 322
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 4 RGRRRETSHRITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKTESG 156
R + R+ +H ++ NRH H K + SRR D E G E G
Sbjct: 851 RKKSRKHTHASDSDSENRHKRHKKDR----DSSRRNGTRDDLEDGELGEDG 897
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,568
Number of Sequences: 37544
Number of extensions: 120610
Number of successful extensions: 513
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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