Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G23
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   6.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.8  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           20   8.8  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           20   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +1

Query: 31  RITREAANRHPEHTKGEPEPGEGSRRQHGSDLTETGAKT 147
           R+T    + H       PEP + S    GS + +    T
Sbjct: 336 RLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPKLNLST 374


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 74  LVCSG-WRFAASRVMRWLVSRRRP 6
           +VC   W F  S ++ W +++  P
Sbjct: 390 VVCLAFWSFIVSTILLWFINKIIP 413


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +2

Query: 266 YNSCIIICN 292
           Y++CI +CN
Sbjct: 52  YDNCITVCN 60


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 23 QATALHEKLQTAIQNT 70
          QAT L E+ +  +QNT
Sbjct: 20 QATGLTERQKKLVQNT 35


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 23 QATALHEKLQTAIQNT 70
          QAT L E+ +  +QNT
Sbjct: 20 QATGLTERQKKLVQNT 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,247
Number of Sequences: 438
Number of extensions: 1120
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)