Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G21
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   1.8  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    23   5.5  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 49  IWQPDLVPNSCSTGG 5
           +W P  +PN+C T G
Sbjct: 73  LWYPQTIPNACGTIG 87


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 63  YFFKQYGNRTSCRIPAAPGD 4
           YF K+YG   +C+I    GD
Sbjct: 255 YFVKKYGFSPNCQIIPLTGD 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,922
Number of Sequences: 5004
Number of extensions: 1675
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 3
effective length of database: 2,347,466
effective search space used: 42254388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)