Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G21
         (65 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   3.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    18   9.7  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 61 FF*TIWQPD 35
          FF ++WQPD
Sbjct: 67 FFDSLWQPD 75


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 2   GSPGAAGIRHE 34
           GSPG+ GIR +
Sbjct: 286 GSPGSGGIRSD 296


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 49  IWQPDLVPNSCSTGG 5
           IW PD+V +S ++ G
Sbjct: 115 IWVPDIVMHSVTSVG 129


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
          protein.
          Length = 486

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 63 YFFKQYGNRT 34
          Y+F  Y NRT
Sbjct: 29 YYFYDYSNRT 38


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 49  IWQPDLV 29
           IW+PD+V
Sbjct: 110 IWRPDIV 116


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 49  IWQPDLV 29
           IW+PD+V
Sbjct: 110 IWRPDIV 116


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -2

Query: 49  IWQPDLV 29
           IW+PD+V
Sbjct: 106 IWRPDIV 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,971
Number of Sequences: 438
Number of extensions: 206
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 3
effective length of database: 145,029
effective search space used:  2610522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)