Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G20
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...    53   7e-08
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...    52   2e-07
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...    51   3e-07
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834...    29   1.7  
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    28   2.2  
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     28   2.2  
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    28   2.2  
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           28   2.2  

>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 27/72 (37%), Positives = 33/72 (45%)
 Frame = -1

Query: 384 FKNLLAIAAVTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXES 205
           +KN+LA+A  TE  +  A  IKEY+KDPSKF                           E 
Sbjct: 248 YKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEE 307

Query: 204 ESDDDMGFGLFD 169
           ESD D+G  LFD
Sbjct: 308 ESDGDLGMSLFD 319


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 384 FKNLLAIAAVTEVDFKEATTIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXE 208
           +KN+LA+A  TE  +  A  IKEY+KDPSKF V                          E
Sbjct: 248 YKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAAVAAADSGAAAPAASKEEEKKEEPE 307

Query: 207 SESDDDMGFGLFD 169
            ESD D+G  LFD
Sbjct: 308 EESDGDLGMSLFD 320


>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 384 FKNLLAIAAVTEVDFKEATTIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXE 208
           +KN+LA+A  TE  +  A  IKEY+KDPSKF V                          E
Sbjct: 248 YKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAAADSGAAAVASSKEEEKKEEPE 307

Query: 207 SESDDDMGFGLFD 169
            ESD D+G  LFD
Sbjct: 308 EESDGDLGMSLFD 320


>03_05_0947 -
           29081007-29081047,29081670-29081958,29083044-29083424,
           29083935-29084129
          Length = 301

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 162 RVHRNRHVVASTPPGRTNPYGGRCDL 85
           R  R+  VV   PP RT P GG C L
Sbjct: 18  RPRRSAAVVCERPPHRTGPAGGSCFL 43


>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 204 ESDDDMGFGLFD 169
           ESDDDMGF LFD
Sbjct: 99  ESDDDMGFSLFD 110


>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 204 ESDDDMGFGLFD 169
           ESDDDMGF LFD
Sbjct: 102 ESDDDMGFSLFD 113


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 204 ESDDDMGFGLFD 169
           ESDDDMGF LFD
Sbjct: 295 ESDDDMGFSLFD 306


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 204 ESDDDMGFGLFD 169
           ESDDDMGF LFD
Sbjct: 103 ESDDDMGFSLFD 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,558,999
Number of Sequences: 37544
Number of extensions: 110780
Number of successful extensions: 247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)