Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G20
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   3.7  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.6  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 126 PPGRTNPYGGRCDLQTLRFYV 64
           PPG    +G     QT+RF V
Sbjct: 273 PPGVPGDHGDHAPKQTVRFKV 293


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 106 IWRSMRLTNITFLCNKY 56
           I R M+ T+ITF  NK+
Sbjct: 37  ILRGMQFTDITFGVNKW 53


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 88  VASTAIWVCPSRRC*CDHMSITMH 159
           V  T +WV  ++R      ++TMH
Sbjct: 87  VLHTTVWVAGAQRGNEQRCTVTMH 110


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 186 GFGLFD*ARVHRNRHVVASTPPGR 115
           GFG F    VH+   +   TP  R
Sbjct: 269 GFGDFQPVHVHKQTAIAFRTPTYR 292


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 186 GFGLFD*ARVHRNRHVVASTPPGR 115
           GFG F    VH+   +   TP  R
Sbjct: 269 GFGDFQPVHVHKQTAIAFRTPTYR 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,902
Number of Sequences: 438
Number of extensions: 983
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)