Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G19
         (396 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.062
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   4.1  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          23   5.4  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          23   5.4  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          23   5.4  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          23   5.4  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    22   7.1  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 0.062
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
 Frame = +2

Query: 260 KKDKQIE-ELNSICKQLKDKLS---QLDIQLSEKNQRLNVLEKEVQK 388
           ++DK I+ EL S+ KQ+KDK+S   +L   L +   +   LEK++Q+
Sbjct: 390 ERDKWIQGELKSLNKQIKDKISHQNKLQDDLKKDIAKQGELEKKIQE 436



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 254 LNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
           L +  KQ+EEL+   K   DK   L  ++ +   RL   +K ++
Sbjct: 232 LKETRKQLEELDGQRKSSGDKQLLLTQEIQKAQDRLKNAQKALK 275



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 299 KQLKDKLSQLDIQLSEKNQRLNVLEKEVQKS 391
           K+ + +L +LD Q      +  +L +E+QK+
Sbjct: 233 KETRKQLEELDGQRKSSGDKQLLLTQEIQKA 263


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 4/121 (3%)
 Frame = +2

Query: 38  EAIWKEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDA 217
           E + KEK    E K +D      + +E   +   +                      + A
Sbjct: 349 ERVEKEKLVKEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERRKKTLEQIAA 408

Query: 218 NVKMQTALSQDLLNKKDKQIEE----LNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
             K    L QD+  K  K+IEE    + S+ +Q  +  ++L   L+       VL +E +
Sbjct: 409 EEKRLLEL-QDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDETKVLLEEKE 467

Query: 386 K 388
           K
Sbjct: 468 K 468


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 239 LSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEK 376
           L + +    D   +E++  CK L   + +L  ++++   +LN+L +
Sbjct: 84  LKEPVAKPSDMVKQEVSKRCKALASFMEELMDEVAQPELKLNLLNE 129


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 239 LSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEK 376
           L + +    D   +E++  CK L   + +L  ++++   +LN+L +
Sbjct: 84  LKEPVAKPSDMVKQEVSKRCKALASFMEELMDEVAQPELKLNLLNE 129


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 239 LSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEK 376
           L + +    D   +E++  CK L   + +L  ++++   +LN+L +
Sbjct: 84  LKEPVAKPSDMVKQEVSKRCKALASFMEELMDEVAQPELKLNLLNE 129


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 239 LSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEK 376
           L + +    D   +E++  CK L   + +L  ++++   +LN+L +
Sbjct: 84  LKEPVAKPSDMVKQEVSKRCKALASFMEELMDEVAQPELKLNLLNE 129


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 149 YGTLSLFCICLLPSLTQYVLSHVFYV 72
           YG+ S     L+P   +Y L H +++
Sbjct: 182 YGSYSNRSFTLVPGTAEYSLPHAYFL 207


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,054
Number of Sequences: 2352
Number of extensions: 5636
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31212099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)