Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G19
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 34 0.042
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 34 0.042
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 34 0.042
AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine re... 31 0.30
AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical ... 31 0.40
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 0.69
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 29 0.91
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 29 0.91
Z70682-3|CAE46662.1| 187|Caenorhabditis elegans Hypothetical pr... 29 0.91
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 29 0.91
U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical pr... 29 1.2
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 1.2
Z81107-9|CAB03234.2| 304|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z68335-4|CAA92732.2| 304|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 1.6
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 1.6
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 28 2.1
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 28 2.1
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 28 2.1
AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical ... 28 2.8
Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical pr... 27 3.7
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 27 3.7
AF047655-9|AAC04395.1| 313|Caenorhabditis elegans Hypothetical ... 27 3.7
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 4.9
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 27 4.9
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 27 4.9
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 27 4.9
AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical... 27 4.9
AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical... 27 4.9
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 27 4.9
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 27 4.9
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 27 4.9
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 27 4.9
Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical p... 27 6.4
U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical pr... 27 6.4
U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein. 27 6.4
Z92832-4|CAB07373.1| 488|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68303-6|CAD89754.1| 708|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z68303-5|CAA92639.2| 706|Caenorhabditis elegans Hypothetical pr... 26 8.5
U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone... 26 8.5
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 26 8.5
U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear recep... 26 8.5
AF022971-11|AAZ32813.1| 265|Caenorhabditis elegans Hypothetical... 26 8.5
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.9 bits (74), Expect = 0.042
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 269 KQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKE 379
K +E L S+ L+DKL+ L+ QL++ R N LE+E
Sbjct: 1163 KAVENLKSVEDDLRDKLNNLEKQLADSLNRENELERE 1199
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.9 bits (74), Expect = 0.042
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 269 KQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKE 379
K +E L S+ L+DKL+ L+ QL++ R N LE+E
Sbjct: 1236 KAVENLKSVEDDLRDKLNNLEKQLADSLNRENELERE 1272
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.9 bits (74), Expect = 0.042
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 269 KQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKE 379
K +E L S+ L+DKL+ L+ QL++ R N LE+E
Sbjct: 1236 KAVENLKSVEDDLRDKLNNLEKQLADSLNRENELERE 1272
>AF016451-8|AAB66004.2| 354|Caenorhabditis elegans Serpentine
receptor, class t protein65 protein.
Length = 354
Score = 31.1 bits (67), Expect = 0.30
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -2
Query: 272 VCLFCLKGLEK-VLFAFLHL---HPYFFVVVISPELIALFLVLKLYGTLSLFCICLLPSL 105
V + C+K L K + + FL+L H + SP++ A F + K Y TLS + +LP +
Sbjct: 25 VKILCIKILCKFITWDFLYLIKLHDELVKLKFSPKVYARFKIFKTYQTLS--TLAILPKM 82
Query: 104 TQY 96
T++
Sbjct: 83 TKF 85
>AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical
protein Y39H10B.2 protein.
Length = 232
Score = 30.7 bits (66), Expect = 0.40
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 245 QDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRL 361
Q+ + +K +E C Q K+K + L++QL E N+R+
Sbjct: 139 QETKEQLEKIVELQRKSCDQNKEKFTALELQLQETNERM 177
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.9 bits (64), Expect = 0.69
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 278 EELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
EEL ++L K+ ++ QL NQ++ LEK Q+
Sbjct: 1394 EELEETRRKLTHKVQEMQEQLENANQKIGTLEKNKQR 1430
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 29.5 bits (63), Expect = 0.91
Identities = 20/109 (18%), Positives = 45/109 (41%)
Frame = +2
Query: 14 LKSSTMNNEAIWKEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXX 193
L+ + ++E + +E + KI +L + +++ K +
Sbjct: 1193 LEETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSN 1252
Query: 194 XXXXNMDANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQL 340
++A K + A + L +KD ++ E+ S L KLS+++ +L
Sbjct: 1253 IASARLEAEKKRKAA--ETSLMEKDHKMREMQSNLDDLMAKLSKMNNEL 1299
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/113 (18%), Positives = 47/113 (41%)
Frame = +2
Query: 50 KEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVKM 229
+E+C D+ ++ D ++ + K R E A ++
Sbjct: 1015 EERCEDLSSRLIDEVERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQL 1074
Query: 230 QTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+ Q+ +K ++ EEL + + + +LSQ+ I+ E+ LE+E+++
Sbjct: 1075 RE--EQESCLEKTRKAEELTNQLMRKESELSQISIRNDEELAARQQLEREIRE 1125
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 29.5 bits (63), Expect = 0.91
Identities = 20/109 (18%), Positives = 45/109 (41%)
Frame = +2
Query: 14 LKSSTMNNEAIWKEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXX 193
L+ + ++E + +E + KI +L + +++ K +
Sbjct: 1193 LEETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSN 1252
Query: 194 XXXXNMDANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQL 340
++A K + A + L +KD ++ E+ S L KLS+++ +L
Sbjct: 1253 IASARLEAEKKRKAA--ETSLMEKDHKMREMQSNLDDLMAKLSKMNNEL 1299
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/113 (18%), Positives = 47/113 (41%)
Frame = +2
Query: 50 KEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVKM 229
+E+C D+ ++ D ++ + K R E A ++
Sbjct: 1015 EERCEDLSSRLIDEVERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQL 1074
Query: 230 QTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+ Q+ +K ++ EEL + + + +LSQ+ I+ E+ LE+E+++
Sbjct: 1075 RE--EQESCLEKTRKAEELTNQLMRKESELSQISIRNDEELAARQQLEREIRE 1125
>Z70682-3|CAE46662.1| 187|Caenorhabditis elegans Hypothetical
protein F08G5.3b protein.
Length = 187
Score = 29.5 bits (63), Expect = 0.91
Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 215 ANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLD--IQLSEKNQRLNVLEK 376
AN+++ T Q+ L DK+ + L + L+ K+++L+ ++L + ++ ++K
Sbjct: 31 ANIRVNTQQFQERLTYLDKRYDHLRKMTHSLRKKVNELEDIMRLDNDEENMDTIQK 86
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 29.5 bits (63), Expect = 0.91
Identities = 20/109 (18%), Positives = 45/109 (41%)
Frame = +2
Query: 14 LKSSTMNNEAIWKEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXX 193
L+ + ++E + +E + KI +L + +++ K +
Sbjct: 1193 LEETVKSSEEVVEEMKAQNQKKIEELNETIDQLKRQKISADKAKSSAESDNENFRAELSN 1252
Query: 194 XXXXNMDANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQL 340
++A K + A + L +KD ++ E+ S L KLS+++ +L
Sbjct: 1253 IASARLEAEKKRKAA--ETSLMEKDHKMREMQSNLDDLMAKLSKMNNEL 1299
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/113 (18%), Positives = 47/113 (41%)
Frame = +2
Query: 50 KEKCTDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVKM 229
+E+C D+ ++ D ++ + K R E A ++
Sbjct: 1015 EERCEDLSSRLIDEVERSKQLVKAKARLEATVAEINDELEKEKQQRHNAETARRAAETQL 1074
Query: 230 QTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+ Q+ +K ++ EEL + + + +LSQ+ I+ E+ LE+E+++
Sbjct: 1075 RE--EQESCLEKTRKAEELTNQLMRKESELSQISIRNDEELAARQQLEREIRE 1125
>U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical
protein B0554.5 protein.
Length = 468
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 260 CLKGLEKVLFAFLHLHPYFFVVVISPELIALFLVLKLYGTLSLFCICLLPSLTQYVL--S 87
C++ + F+ V+SP+++ LF + L G + F + + P+ + + S
Sbjct: 223 CIESSSEKKETFMEAFKLTCSTVVSPKMLQLFPLFVLSGLNTSFWLSVFPTAMSFTMQNS 282
Query: 86 HVFYVPCLYIF 54
++ Y+ +Y F
Sbjct: 283 NLIYLAAVYSF 293
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 212 DANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+++ K+ +++D+ + K K E L ++ K + + + + +E N RLN LEKE+ K
Sbjct: 7799 ESSDKIDPQVAKDIKDSKTKAKELLQALEKAIPQE-DAIRREQAEINDRLNKLEKELTK 7856
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 212 DANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+++ K+ +++D+ + K K E L ++ K + + + + +E N RLN LEKE+ K
Sbjct: 3233 ESSDKIDPQVAKDIKDSKTKAKELLQALEKAIPQE-DAIRREQAEINDRLNNLEKELTK 3290
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 212 DANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+++ K+ +++D+ + K K E L ++ K + + + + +E N RLN LEKE+ K
Sbjct: 4136 ESSDKIDPQVAKDIKDSKTKAKELLQALEKAIPQE-DAIRREQAEINDRLNNLEKELTK 4193
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 212 DANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+++ K+ +++D+ + K K E L ++ K + + + + +E N RLN LEKE+ K
Sbjct: 5090 ESSDKIDPQVAKDIKDSKTKAKELLQALEKAIPQE-DAIRREQAEINDRLNNLEKELTK 5147
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 212 DANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+++ K+ +++D+ + K K E L ++ K + + + + +E N RLN LEKE+ K
Sbjct: 5993 ESSDKIDPQVAKDIKDSKTKAKELLQALEKAIPQE-DAIRREQAEINDRLNNLEKELTK 6050
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 212 DANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+++ K+ +++D+ + K K E L ++ K + + + + +E N RLN LEKE+ K
Sbjct: 6896 ESSDKIDPQVAKDIKDSKTKAKELLQALEKAIPQE-DAIRREQAEINDRLNNLEKELTK 6953
>Z81107-9|CAB03234.2| 304|Caenorhabditis elegans Hypothetical
protein R07H5.10 protein.
Length = 304
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 263 KDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQKSH 394
KD++IE+LN++ + K + + +++ + L L+ E++K H
Sbjct: 222 KDQKIEQLNNLVQSGKQRENARIMEVQREKNILRQLKNELRKGH 265
>Z68335-4|CAA92732.2| 304|Caenorhabditis elegans Hypothetical
protein R07H5.10 protein.
Length = 304
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 263 KDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQKSH 394
KD++IE+LN++ + K + + +++ + L L+ E++K H
Sbjct: 222 KDQKIEQLNNLVQSGKQRENARIMEVQREKNILRQLKNELRKGH 265
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 245 QDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKE 379
Q LNKK K++EE+ + ++L + + D +L E + LEK+
Sbjct: 299 QSRLNKKRKELEEVQAENRKLLEDKNTHDFELDEAKVQGEHLEKQ 343
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 245 QDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKE 379
Q LNKK K++EE+ + ++L + + D +L E + LEK+
Sbjct: 299 QSRLNKKRKELEEVQAENRKLLEDKNTHDFELDEAKVQGEHLEKQ 343
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
protein R07G3.3c protein.
Length = 1316
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Frame = +2
Query: 62 TDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVKMQTAL 241
TDM ++ D++ S+M E+ R E D N++++T +
Sbjct: 43 TDMRERVEDVSRSNSRMLEELTRHAAEIKEHINRQRVLESTRNELT----DKNLELETVV 98
Query: 242 SQDLLNKKDKQIEELNSI---------CKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
S+ + K+++ +N+ LKD++ +L + + LEKE+Q
Sbjct: 99 SRLKIEKEERDAAVVNATKLAQTAQVETFALKDEIKKLTNEQASLRHSKEALEKEIQ 155
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
protein R07G3.3a protein.
Length = 1982
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Frame = +2
Query: 62 TDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVKMQTAL 241
TDM ++ D++ S+M E+ R E D N++++T +
Sbjct: 43 TDMRERVEDVSRSNSRMLEELTRHAAEIKEHINRQRVLESTRNELT----DKNLELETVV 98
Query: 242 SQDLLNKKDKQIEELNSI---------CKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
S+ + K+++ +N+ LKD++ +L + + LEKE+Q
Sbjct: 99 SRLKIEKEERDAAVVNATKLAQTAQVETFALKDEIKKLTNEQASLRHSKEALEKEIQ 155
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
protein R07G3.3b protein.
Length = 1987
Score = 28.3 bits (60), Expect = 2.1
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Frame = +2
Query: 62 TDMEHKIHDLTHIVSKMEEDKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVKMQTAL 241
TDM ++ D++ S+M E+ R E D N++++T +
Sbjct: 43 TDMRERVEDVSRSNSRMLEELTRHAAEIKEHINRQRVLESTRNELT----DKNLELETVV 98
Query: 242 SQDLLNKKDKQIEELNSI---------CKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
S+ + K+++ +N+ LKD++ +L + + LEKE+Q
Sbjct: 99 SRLKIEKEERDAAVVNATKLAQTAQVETFALKDEIKKLTNEQASLRHSKEALEKEIQ 155
>AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical
protein Y45F10D.9 protein.
Length = 492
Score = 27.9 bits (59), Expect = 2.8
Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = +2
Query: 50 KEKCTDMEHKIHDLTHIVSKMEE-DKCRRETEFHXXXXXXXXXXXXXXXXXXXNMDANVK 226
++KC D+E ++ L+ + + EE + +E E + A++K
Sbjct: 201 RQKCGDLEKQVEKLSGVKEEFEEMSEKFKELEDEVELVKEERENIRLLVEDKEDEVADLK 260
Query: 227 MQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEV 382
T Q L + +++E + ++ ++ + K+ QL + + + L E+
Sbjct: 261 QDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAEL 312
>Z49129-1|CAA88962.1| 262|Caenorhabditis elegans Hypothetical
protein T05B9.1 protein.
Length = 262
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 239 LSQDLLN--KKDKQIEE-LNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEV 382
L+QD LN K K++EE + + Q D +QLD Q++ EKE+
Sbjct: 45 LTQDKLNDAKSRKKLEESMEELKSQNLDLKAQLDFQMAHFQSLFEAHEKEI 95
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 156 KTLWNSVSLLHLSSSIFDTICVKSCILCSMSVHFSFHIASL 34
KT+WN+VS LH+ + D + + + S+ S H+ +
Sbjct: 115 KTVWNNVSKLHIYNYAEDRTDIITSFINSLKSEKSVHVKQI 155
>AF047655-9|AAC04395.1| 313|Caenorhabditis elegans Hypothetical
protein C17B7.11 protein.
Length = 313
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 156 KTLWNSVSLLHLSSSIFDTICVKSCILCSMSVHFSFHIASL 34
KT+WN+VS LH+ + D + + + S+ S H+ +
Sbjct: 115 KTVWNNVSKLHIYNYAEDRTDIITSFINSLKSEKSVHVKQI 155
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 245 QDLLNKKDKQI----EELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
+D L+ K +I EEL + +L +K SQ +L+E + LE++VQK
Sbjct: 154 EDELSAKTHEIFSIGEELKNKTMKLNEKNSQFQTKLAEISSENRNLERKVQK 205
>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
protein T06E4.1 protein.
Length = 1295
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 266 DKQIEELNSICKQLKDKLSQLDI 334
+ Q+EEL S C++L DK ++D+
Sbjct: 313 EHQLEELKSRCEELTDKALKVDV 335
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 206 NMDANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
+M++ K++ + Q N+ + + K+++D + L +L + + ++LEKEVQ
Sbjct: 277 DMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLENKNSLLEKEVQ 336
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 206 NMDANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
+M++ K++ + Q N+ + + K+++D + L +L + + ++LEKEVQ
Sbjct: 277 DMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLENKNSLLEKEVQ 336
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +2
Query: 206 NMDANVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
+M++ K++ + Q N+ + + K+++D + L +L + + ++LEKEVQ
Sbjct: 308 DMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLENKNSLLEKEVQ 367
>AL132860-32|CAO82074.1| 570|Caenorhabditis elegans Hypothetical
protein Y56A3A.7b protein.
Length = 570
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 206 NMDANVKMQTALSQDLLNK-KDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEV 382
N V ++T DL ++ K+K+ EE+ K+ +K Q++ + EK +N K +
Sbjct: 256 NQRVPVIVETQEKPDLNDEEKEKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRL 315
Query: 383 QK 388
Q+
Sbjct: 316 QE 317
>AL132860-31|CAB60519.2| 457|Caenorhabditis elegans Hypothetical
protein Y56A3A.7a protein.
Length = 457
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 206 NMDANVKMQTALSQDLLNK-KDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEV 382
N V ++T DL ++ K+K+ EE+ K+ +K Q++ + EK +N K +
Sbjct: 256 NQRVPVIVETQEKPDLNDEEKEKRREEIRENIKKEMEKKEQVNTLIREKLASMNARRKRL 315
Query: 383 QK 388
Q+
Sbjct: 316 QE 317
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 260 KKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
K+ +++EE + K+K+ QL+ ++ EK +R K+ +K
Sbjct: 917 KRIEEVEEQRKREAEDKEKIEQLNAKVREKEERSEARRKQKEK 959
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 212 DANVKMQTALSQD-LLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
+A K + L D +L KKD +I EL++ K++K + +L+ + ++LN+ +E++
Sbjct: 879 EAFAKEKQLLEHDSVLRKKDDKIRELDAEFKRVKMEYVKLETKSFHDVRKLNMDVEELK 937
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 212 DANVKMQTALSQD-LLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQ 385
+A K + L D +L KKD +I EL++ K++K + +L+ + ++LN+ +E++
Sbjct: 891 EAFAKEKQLLEHDSVLRKKDDKIRELDAEFKRVKMEYVKLETKSFHDVRKLNMDVEELK 949
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 254 LNKKDKQIEELNSICKQLKDKLSQLDIQLSEKN 352
++K +IE SI KQL+ ++SQL + E N
Sbjct: 444 ISKLKTEIERETSISKQLEKEISQLRTETDEMN 476
>Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical
protein C50F4.11 protein.
Length = 679
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +2
Query: 242 SQDLLNKKDK---QIE----ELNSICKQLKDKLSQLDIQLS 343
SQDL N+K + Q+E EL + KQL++ SQLD LS
Sbjct: 432 SQDLENEKSRLSEQLELSNNELEKVKKQLEESQSQLDEVLS 472
>U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical
protein F46H5.7b protein.
Length = 575
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 260 KKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQKS 391
K D+Q+E+L + +LK ++ + LS ++ LEK+++ +
Sbjct: 168 KNDRQLEKLRNRNDELKIRVKEYKSDLSAAQLKVKNLEKKLESA 211
>U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical
protein F46H5.7a protein.
Length = 572
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 260 KKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQKS 391
K D+Q+E+L + +LK ++ + LS ++ LEK+++ +
Sbjct: 168 KNDRQLEKLRNRNDELKIRVKEYKSDLSAAQLKVKNLEKKLESA 211
>AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein.
Length = 679
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Frame = +2
Query: 242 SQDLLNKKDK---QIE----ELNSICKQLKDKLSQLDIQLS 343
SQDL N+K + Q+E EL + KQL++ SQLD LS
Sbjct: 432 SQDLENEKSRLSEQLELSNNELEKVKKQLEESQSQLDEVLS 472
>Z92832-4|CAB07373.1| 488|Caenorhabditis elegans Hypothetical
protein F31D4.5 protein.
Length = 488
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/57 (21%), Positives = 32/57 (56%)
Frame = +2
Query: 218 NVKMQTALSQDLLNKKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEVQK 388
NVK + ++ ++ +++ LNS + L+ + L+I+ + +++L + +E +K
Sbjct: 270 NVKNELKMTNEMKKTLEQEKMSLNSKTEHLQANMESLNIEKEKIHEQLQEIVREREK 326
>Z68303-6|CAD89754.1| 708|Caenorhabditis elegans Hypothetical
protein ZK809.5b protein.
Length = 708
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +2
Query: 41 AIWKEKCTDMEHKIHDLTHIVSKMEEDKCRRETE 142
++WK++ ++EH ++ V +M ED R + +
Sbjct: 240 SMWKKRTAELEHDANETRKRVGEMMEDNFRLKNQ 273
>Z68303-5|CAA92639.2| 706|Caenorhabditis elegans Hypothetical
protein ZK809.5a protein.
Length = 706
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +2
Query: 41 AIWKEKCTDMEHKIHDLTHIVSKMEEDKCRRETE 142
++WK++ ++EH ++ V +M ED R + +
Sbjct: 238 SMWKKRTAELEHDANETRKRVGEMMEDNFRLKNQ 271
>U53154-7|AAC25857.1| 356|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 42 protein.
Length = 356
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 272 QIEELNSICKQLKDKLSQLDIQLSEKNQRLN 364
Q EE +CKQ+K K+ + ++ EKN R+N
Sbjct: 278 QNEECIEVCKQMKAKIIE-ELTDYEKNVRIN 307
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 260 KKDKQIEELNSICKQLKDKLSQLDIQLSEKNQRLNVLEKEV 382
K +Q+EEL+ +Q K + SQL+ Q ++ +Q + +E+
Sbjct: 1199 KFSRQVEELHDQIEQHKKQRSQLEKQQNQADQERADMAQEI 1239
>U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical
protein F57C12.2 protein.
Length = 556
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 257 NKKDKQIEELNSICKQLKDKLSQLDIQLSEKN 352
N+K K I +L+ ++LK + L+ QLSEKN
Sbjct: 43 NQK-KSITQLHGAIQKLKMEKQNLETQLSEKN 73
>AF273783-1|AAG15132.1| 358|Caenorhabditis elegans nuclear receptor
NHR-42 protein.
Length = 358
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 272 QIEELNSICKQLKDKLSQLDIQLSEKNQRLN 364
Q EE +CKQ+K K+ + ++ EKN R+N
Sbjct: 280 QNEECIEVCKQMKAKIIE-ELTDYEKNVRIN 309
>AF022971-11|AAZ32813.1| 265|Caenorhabditis elegans Hypothetical
protein C31B8.16 protein.
Length = 265
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 233 FAFLHLHPYFFVVVISPELIALFLVLKLYGTLSLFCICLLPSLTQYVL 90
++F +P+ +V+V +IA +L + L L IC+L L Y L
Sbjct: 122 YSFAARYPFLWVMVEDIMIIAFACILFMSLGLLLIAICILYVLIYYEL 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,647,759
Number of Sequences: 27780
Number of extensions: 132413
Number of successful extensions: 882
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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