Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G14
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   2.1  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    24   3.6  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    24   3.6  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    24   4.7  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    23   6.3  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    23   8.3  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    23   8.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    23   8.3  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    23   8.3  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 42   VLDKTY*SKNTILAQHILTTRKQLSIESIIEYVRALKLLAQDCDNREVSAIQHRN 206
            VL   Y  K  +  + I+    QLS  +++EY++ L  +  DC  ++   +   N
Sbjct: 908  VLIPHYAEKILLSLREIIREEDQLSRVTLLEYLKQLHPVEWDCFVKDTKILVEEN 962


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 107 FSRCKYMLCKNCIFTLIG 54
           F  C + + K C+FT+IG
Sbjct: 6   FLICLFFIFKRCVFTVIG 23


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 238 DGYQEAPLSD*FLCWIADTSLLSQSCAKSFSARTYSMMDSIDSCFRVVSICCARIVFLL 62
           D  Q+ PL+    C     S  ++S + S  A T+S++ S  S  R+V++    ++ LL
Sbjct: 135 DALQKDPLTYVKSCRARFVSKDTKSFSYSSLANTFSLISSTKSRIRIVTLLTNFLLTLL 193


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 166 IAITEKYLRSNIE--ISHSEGLLGNHPFYRKKSTAGHRSP 279
           I +  + L  N E  IS SE L   HP++   ST  HR+P
Sbjct: 407 IDLINRMLEINPEKRISESEAL--QHPWFYTVSTHEHRTP 444


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 181 KYLRSNIEISHSEGLLGNHPFYRK 252
           KYLRS++  S+ + L+  + FY +
Sbjct: 393 KYLRSDVLASYRQPLVQKYTFYTR 416


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 51   KTY*SKNTILAQHILTTRKQLSIESIIEYVRALKLLAQDCDNR 179
            K Y   N +L   I  T     +  + +++   KL A+D +NR
Sbjct: 896  KAYIEANKLLGDIIKVTPTSKVVGDLAQFMVQNKLSAEDVENR 938


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 178 EKYLRSNIEISHSEGLLGNHPFYRK 252
           ++Y+RS+I I  S G+     FY+K
Sbjct: 36  KQYIRSSIPILESSGVNLTKAFYQK 60


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 46   LIKPIKVKIQFLHNIYLQRENNYLLSP 126
            ++ PI+   +F+H+   Q E+ YL  P
Sbjct: 964  MVNPIQSLCKFVHSFLDQHESMYLKYP 990


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +1

Query: 157 WHKIAITEKYLRSNIEISHSEGLLGNHP 240
           W K++++E  L   ++I++ + +   HP
Sbjct: 635 WQKVSLSELVLPKKVKIAYMKAVSRVHP 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,804
Number of Sequences: 5004
Number of extensions: 21903
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)