Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G14
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0200 + 2171178-2172338                                           31   0.18 
11_06_0548 + 24864868-24865455                                         27   3.0  
04_01_0429 + 5648126-5648340,5649522-5649702                           27   3.0  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    26   3.9  
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377...    26   3.9  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    26   5.2  
07_03_1416 - 26415330-26417153                                         26   5.2  
10_01_0201 + 2175660-2176892                                           25   6.8  
11_06_0291 + 22008412-22012284                                         25   9.0  

>10_01_0200 + 2171178-2172338
          Length = 386

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 182 SICDPT*KLVTQRGFLVTIHSTERSPLLDI 271
           S C P  +L+T R FL  +H+    PLL +
Sbjct: 33  SACKPLRRLITSRAFLARLHALHAKPLLGL 62


>11_06_0548 + 24864868-24865455
          Length = 195

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 120 ESIIEYVRALKLLAQDCDNREVSAIQHRN*SLRGASW 230
           E +  +++ ++ LAQDC N   +  QH + ++R  SW
Sbjct: 23  EQVWTWMKQVRELAQDCSNCIDTYRQHGDLAVRHPSW 59


>04_01_0429 + 5648126-5648340,5649522-5649702
          Length = 131

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 280 GETYVQQWTSFGRMDGYQEAPLSD*FLC-WIADTSLLSQSCAKSFSARTY 134
           G   V++WTS  +++  ++ PL    +  W+ D S L + C   +    Y
Sbjct: 22  GVAVVERWTSNIKVEEQRDMPLGSMAIAWWMIDGSCLDKQCRGEWCLLVY 71


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 EYVRALKLLAQDCDNREVSAIQHRN*SLRGASW 230
           E+ + ++ LAQDC N   + +Q  + ++R ASW
Sbjct: 56  EHDKQVRELAQDCSNCIDTYLQRGDPAVRHASW 88


>01_06_0291 -
           28236235-28236576,28236785-28236900,28237560-28237731,
           28238916-28239044,28239165-28239320
          Length = 304

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 169 AITEKYLRSNIEISHSEGLLGNHPFYR 249
           AI +KY R + E  H  G+ G  PF R
Sbjct: 12  AICQKYGRYDAEKLHGSGVAGEDPFAR 38


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 232 YQEAPL--SD*FLCWIADTSLLSQSCAKSFSARTYSMMDSIDSCFRVVS 92
           ++EAPL   D FLC   D S LSQS  K   A        + S FR+ S
Sbjct: 267 WREAPLVFCDSFLCPTGDRSGLSQSELKDAVASILLNHKGVVSYFRIDS 315


>07_03_1416 - 26415330-26417153
          Length = 607

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 268 VQQWTSFGRMD----GYQEAPLSD*FLCWIADTSLLSQS 164
           V+ +   GR+D     + EAPL D FLC +   + +S+S
Sbjct: 114 VEMYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRS 152


>10_01_0201 + 2175660-2176892
          Length = 410

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 182 SICDPT*KLVTQRGFLVTIHSTERSPLLDI 271
           S C    +L+T R FL  +H+    PLL +
Sbjct: 42  SACRALRRLITSRAFLRRVHALHPRPLLGL 71


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 120 ESIIEYVRALKLLAQDCDN 176
           E +  +++ ++LLAQDC+N
Sbjct: 59  EQVCTWMKQVRLLAQDCNN 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,335,508
Number of Sequences: 37544
Number of extensions: 124216
Number of successful extensions: 254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)