Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G14
(281 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulat... 30 0.29
AC006671-5|AAF39915.1| 349|Caenorhabditis elegans Hypothetical ... 27 2.7
AF016684-8|AAB66211.1| 302|Caenorhabditis elegans Hypothetical ... 26 3.6
Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical pr... 26 4.8
U64833-2|AAB04815.1| 214|Caenorhabditis elegans Hypothetical pr... 25 6.3
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 25 6.3
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 25 6.3
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 25 6.3
Z81533-2|CAB04342.1| 432|Caenorhabditis elegans Hypothetical pr... 25 8.4
L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical pr... 25 8.4
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 25 8.4
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 25 8.4
>U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulated
protein 191 protein.
Length = 97
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 267 SSSGLLSVEWMVTKKPL*VTNFYVGSQILLCY 172
SS + SVE + T+KP+ V N Y+ CY
Sbjct: 25 SSQSICSVENVETEKPIGVKNIYIFCSFFFCY 56
>AC006671-5|AAF39915.1| 349|Caenorhabditis elegans Hypothetical
protein K08A2.2 protein.
Length = 349
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 151 NFWHKIAITEKYLRSNIEISHSEGLLGNHPFY 246
NFWHK++ +++L ++ H G +G FY
Sbjct: 150 NFWHKLSKRKEFL----DLGHKAGDVGYKTFY 177
>AF016684-8|AAB66211.1| 302|Caenorhabditis elegans Hypothetical
protein F45C12.13 protein.
Length = 302
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 49 IKPIKVKIQFLHNIYLQREN-NYLLSPS*NMSVH*NFWHKIAITE 180
+ P++ KI+F LQ ++ +S ++H ++W ++ ITE
Sbjct: 244 VAPMETKIKFRRKEELQLGGFDFTMSSGVKATLHFHYWDRVPITE 288
>Z67995-2|CAA91944.2| 458|Caenorhabditis elegans Hypothetical
protein M153.2 protein.
Length = 458
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 202 LCWIADTSLLSQSCAKSFSARTYSMM 125
+ W S LSQ+C K ++R SM+
Sbjct: 116 IIWTGQGSYLSQNCTKETTSRNSSML 141
>U64833-2|AAB04815.1| 214|Caenorhabditis elegans Hypothetical
protein B0507.5 protein.
Length = 214
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 81 QELYFYFNRFYQEPSTLIRIFR 16
+ LY+ FN F Q S ++ IF+
Sbjct: 33 ESLYYQFNEFVQTDSNILYIFK 54
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 94 SICCARIVFLL**VLSRTFNAYTYFSHHA 8
S CC I+ LL +++ N+Y Y S A
Sbjct: 648 SYCCCSIIVLLNMLIAMMSNSYQYISDQA 676
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 94 SICCARIVFLL**VLSRTFNAYTYFSHHA 8
S CC I+ LL +++ N+Y Y S A
Sbjct: 648 SYCCCSIIVLLNMLIAMMSNSYQYISDQA 676
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 94 SICCARIVFLL**VLSRTFNAYTYFSHHA 8
S CC I+ LL +++ N+Y Y S A
Sbjct: 648 SYCCCSIIVLLNMLIAMMSNSYQYISDQA 676
>Z81533-2|CAB04342.1| 432|Caenorhabditis elegans Hypothetical
protein F36G9.3 protein.
Length = 432
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 202 LCWIADTSLLSQSCAKSFSARTYSMMDSIDSC 107
+ W S LSQ+C K ++R +++ + C
Sbjct: 113 ILWTGQGSYLSQNCTKETTSRMAALLWGMHEC 144
>L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical
protein ZC21.3 protein.
Length = 321
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 187 DTSLLSQSCAKSFSARTYSMMDSIDSCFRVVSICC 83
D S +Q S + YS DSI C +V S CC
Sbjct: 262 DQSYSTQQYGSSTPSPQYSA-DSISCCSQVSSTCC 295
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -2
Query: 265 QQWTSFGRMDGYQEAPLSD*FLCWIADTSLLSQSCAKSFSARTYSMMDSIDSCFRVVSIC 86
QQWT G GYQ+ P S + D +L + + M S+ VS C
Sbjct: 296 QQWTPQGYPYGYQQNPNSPPNPALMMDANLPCSAFTDDICHQQREQMGSL------VSKC 349
Query: 85 CARIVFL 65
C + ++L
Sbjct: 350 CNKGIYL 356
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -2
Query: 265 QQWTSFGRMDGYQEAPLSD*FLCWIADTSLLSQSCAKSFSARTYSMMDSIDSCFRVVSIC 86
QQWT G GYQ+ P S + D +L + + M S+ VS C
Sbjct: 318 QQWTPQGYPYGYQQNPNSPPNPALMMDANLPCSAFTDDICHQQREQMGSL------VSKC 371
Query: 85 CARIVFL 65
C + ++L
Sbjct: 372 CNKGIYL 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,670,226
Number of Sequences: 27780
Number of extensions: 122682
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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