Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G13
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 150 1e-37
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 149 2e-37
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 148 3e-37
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 5.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 7.2
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 150 bits (363), Expect = 1e-37
Identities = 76/142 (53%), Positives = 91/142 (64%), Gaps = 4/142 (2%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNR
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ*V-IRLIYDVKGRFTIHRITPEEAK 386
VK + K GK + + + + K RL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
YKLC V+RV G K VP+LVTH
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTH 142
Score = 52.0 bits (119), Expect = 4e-08
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
+KYAL G E + LIKVDGKVRTD P GFMDV+S+EKT + F + + K +
Sbjct: 52 LKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEH-FRLVYDIKGRFT 110
Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
+ + + C +R + + VP
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVP 137
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 149 bits (361), Expect = 2e-37
Identities = 76/142 (53%), Positives = 91/142 (64%), Gaps = 4/142 (2%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNR
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ*V-IRLIYDVKGRFTIHRITPEEAK 386
VK + K GK + + + + K RL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
YKLC V+RV G K VP+LVTH
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTH 142
Score = 50.8 bits (116), Expect = 1e-07
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
+KYAL G E + LIKVDGKVRTD P GFMDV+S++KT + F + + K +
Sbjct: 52 LKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEH-FRLVYDIKGRFT 110
Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
+ + + C +R + + VP
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVP 137
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 148 bits (359), Expect = 3e-37
Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 4/142 (2%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNR
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ*V-IRLIYDVKGRFTIHRITPEEAK 386
VK + + GK + + + + K RL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
YKLC V+RV G K VP+LVTH
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTH 142
Score = 50.4 bits (115), Expect = 1e-07
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +2
Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
+KYAL G E + LI+VDGKVRTD P GFMDV+S+EKT + F + + K +
Sbjct: 52 LKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEH-FRLVYDIKGRFT 110
Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
+ + + C +R + + VP
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVP 137
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 236 LIKVDGKVRTDPVPAGFMDVVSIEKTMSYP 325
LIKVDGKV + V ++K MS+P
Sbjct: 210 LIKVDGKVGGSVDDTKLVKGVVVDKDMSHP 239
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 343 KEGSLSTVSHLKKPSTSCAMCGASRPA 423
KE L + +K S SC++CG R A
Sbjct: 282 KEAVLQKMKEQQKYSCSCSVCGRKRLA 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,099
Number of Sequences: 5004
Number of extensions: 39069
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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