Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G13
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 129 1e-30
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 129 1e-30
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 129 1e-30
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 25 2.2
07_03_0156 - 14524757-14526403 28 3.1
02_05_1167 - 34638709-34639104,34640653-34642158 28 3.1
02_04_0395 + 22590097-22590343,22590566-22590921 27 5.3
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 25 6.1
01_01_0990 + 7847066-7847478,7847713-7848679 25 6.2
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 27 7.1
02_05_0011 + 24953472-24954506 27 7.1
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 7.1
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 24 7.8
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 24 8.0
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928... 27 9.3
11_06_0271 - 21804629-21805836,21805997-21806015 27 9.3
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 27 9.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 129 bits (311), Expect = 1e-30
Identities = 70/142 (49%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Frame = +3
Query: 42 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR---SSTRSPA 212
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNR + T
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 213 MSVKM*TVSSKWTGKCGLTQ-YRRDLWTLYPLRKQ*V-IRLIYDVKGRFTIHRITPEEAK 386
+S+ M GK + Y + + K RL+YD KGRF +H I E+AK
Sbjct: 78 ISILM-QRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 136
Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
+KLC VR V G K +P+L T+
Sbjct: 137 FKLCKVRSVQFGQKGIPFLNTN 158
Score = 44.0 bits (99), Expect = 6e-05
Identities = 26/44 (59%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +2
Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKT 313
+KYALT E + + VDGKVRTD PAGFMDVVSI KT
Sbjct: 68 LKYALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKT 111
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 129 bits (311), Expect = 1e-30
Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 5/143 (3%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR---SSTRSP 209
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNR + T
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 210 AMSVKM*TVSSKWTGKCGLTQ-YRRDLWTLYPLRKQ*V-IRLIYDVKGRFTIHRITPEEA 383
+S+ M GK + Y + + K RL+YD KGRF + + E+A
Sbjct: 61 VISILM-QRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDA 119
Query: 384 KYKLCNVRRVATGPKSVPYLVTH 452
K+KLC VR V G K +PYL T+
Sbjct: 120 KFKLCKVRSVQFGQKGIPYLNTY 142
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +2
Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKT 313
+KYALT E + + VDGKVRTD PAGFMDV+SI KT
Sbjct: 52 LKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKT 95
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 129 bits (311), Expect = 1e-30
Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 5/143 (3%)
Frame = +3
Query: 39 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR---SSTRSP 209
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNR + T
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 210 AMSVKM*TVSSKWTGKCGLTQ-YRRDLWTLYPLRKQ*V-IRLIYDVKGRFTIHRITPEEA 383
+S+ M GK + Y + + K RL+YD KGRF + + E+A
Sbjct: 61 VISILM-QRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDA 119
Query: 384 KYKLCNVRRVATGPKSVPYLVTH 452
K+KLC VR V G K +PYL T+
Sbjct: 120 KFKLCKVRSVQFGQKGIPYLNTY 142
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +2
Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKT 313
+KYALT E + + VDGKVRTD PAGFMDV+SI KT
Sbjct: 52 LKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKT 95
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 25.0 bits (52), Expect(2) = 2.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 48 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 146
G KKH R + K W DK YA + H
Sbjct: 110 GIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAH 142
Score = 22.2 bits (45), Expect(2) = 2.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Frame = +3
Query: 234 VSSKW---TGKCGLTQYRRDLWTLYPLR 308
V S W T CG +YR D TL+ R
Sbjct: 135 VQSDWKAHTKTCGSREYRCDCGTLFSRR 162
>07_03_0156 - 14524757-14526403
Length = 548
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 271 WVSPHFPVHFDETVHILTLIAGE-RVLDRFRRKITS 167
W+SP+FP+ +E + +L ++A + + + R R +T+
Sbjct: 500 WLSPNFPLRTEELLPLLDILANKVKAIRRLRDLLTT 535
>02_05_1167 - 34638709-34639104,34640653-34642158
Length = 633
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 271 WVSPHFPVHFDETVHILTLIAGE-RVLDRFRRKITS 167
W++P FP+ DE + +L ++A + + + R R +T+
Sbjct: 457 WLTPDFPLKTDELIPLLDVLANKVKAVRRLRELLTT 492
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 435 ARSWGRSRRAAHCTACTWLLQV*YGG 358
ARSW RSRR H W L GG
Sbjct: 47 ARSWIRSRRRGHGVGEAWALAAATGG 72
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 24.6 bits (51), Expect(2) = 6.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 48 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 146
G KKH R + K W DK YA + H
Sbjct: 106 GIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAH 138
Score = 21.0 bits (42), Expect(2) = 6.1
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +3
Query: 234 VSSKWTGK---CGLTQYRRDLWTLYPLR 308
V S W CG +YR D TL+ R
Sbjct: 131 VQSDWKAHSKICGTREYRCDCGTLFSRR 158
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 24.6 bits (51), Expect(2) = 6.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 48 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 146
G KKH R + K W DK YA + H
Sbjct: 87 GIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAH 119
Score = 21.0 bits (42), Expect(2) = 6.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +3
Query: 234 VSSKWTGK---CGLTQYRRDLWTLYPLR 308
V S W CG +YR D TL+ R
Sbjct: 112 VQSDWKAHSKTCGTREYRCDCGTLFSRR 139
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 78 APKAWMLDKLGGVYAPRPSTGPHKLRECLPL---VIFLRNRSSTRSPA 212
A W+ ++ G+YA ST P+ L E L +F+ +RSS PA
Sbjct: 291 ADHVWVENRRIGIYALDFSTNPYSLTEINNLDGDCLFISSRSSKSFPA 338
>02_05_0011 + 24953472-24954506
Length = 344
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 283 SRRYWVSPHFPVHFDETVHILTLIAGERVLDRFRRKITSGKHSRSLWGP 137
S+ W+SPHFP F + LIA V + I SG +R++ P
Sbjct: 296 SKSSWISPHFPPSF-RSKRTNHLIACRAVRNAGHPWIVSGGGARAMEQP 343
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -1
Query: 148 LWGPVEGRGAYTPPSLSNIHALGAFKR 68
L G G G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 23.8 bits (49), Expect(2) = 7.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 48 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 146
G KKH R + K W + G YA + H
Sbjct: 123 GIKKHFCRKHGEKRWTCQRCGKRYAVQADLKAH 155
Score = 21.4 bits (43), Expect(2) = 7.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 249 TGKCGLTQYRRDLWTLYPLR 308
T CG +YR D TL+ R
Sbjct: 156 TKTCGTREYRCDCGTLFTRR 175
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 24.2 bits (50), Expect(2) = 8.0
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 48 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 146
G KKH R + K W DK YA + H
Sbjct: 110 GIKKHYCRKHGEKKWRCDKCSKRYAVQSDWKAH 142
Score = 21.0 bits (42), Expect(2) = 8.0
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +3
Query: 234 VSSKWTGK---CGLTQYRRDLWTLYPLR 308
V S W CG +YR D TL+ R
Sbjct: 135 VQSDWKAHSKTCGTREYRCDCGTLFSRR 162
>11_06_0384 +
22990773-22990949,22991315-22991496,22992533-22992887,
22993124-22993426,22994077-22994313
Length = 417
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 382 ASSGVIRWIVNLPFTSYIKRITHCFLNGYNVHKS 281
A GV+RW+ + FT I TH + ++H S
Sbjct: 290 AKWGVLRWLYDGGFTPLIDIFTHASADMVDIHAS 323
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 78 APKAWMLDKLGGVYAPRPSTGPHKLRECLPL---VIFLRNRSSTRSPA 212
A W+ + G+YA ST PH L E L +F+ RSS PA
Sbjct: 295 AEHVWLDTEKIGIYALDFSTNPHSLTEINNLDGDCLFISLRSSKSFPA 342
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 327 LIYDVKGRFTIHRITPEEAKYKLCNVRRVATGP 425
LIYD++G + + P++A L + V T P
Sbjct: 149 LIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,315
Number of Sequences: 37544
Number of extensions: 283507
Number of successful extensions: 758
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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