Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G13
         (454 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   157   9e-39
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   157   9e-39
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   157   9e-39
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   154   5e-38

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  157 bits (380), Expect = 9e-39
 Identities = 84/142 (59%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNR         
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ-*VIRLIYDVKGRFTIHRITPEEAK 386
           V    +    K  GK      Y      +  L K     RL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
           YKLC V++   G K VP+LVTH
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTH 142



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +2

Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
           +KYAL G E   +    L+KVDGKVRTDP  PAG+MDV+++EKT  + F +  + K  + 
Sbjct: 52  LKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEF-FRLVYDVKGRFV 110

Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
            +     + +   C  ++ +   + VP
Sbjct: 111 IHRISAEEAKYKLCKVKKTQLGAKGVP 137


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  157 bits (380), Expect = 9e-39
 Identities = 84/142 (59%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNR         
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ-*VIRLIYDVKGRFTIHRITPEEAK 386
           V    +    K  GK      Y      +  L K     RL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
           YKLC V++   G K VP+LVTH
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTH 142



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +2

Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
           +KYAL G E   +    L+KVDGKVRTDP  PAG+MDV+++EKT  + F +  + K  + 
Sbjct: 52  LKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEF-FRLVYDVKGRFV 110

Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
            +     + +   C  ++ +   + VP
Sbjct: 111 IHRISAEEAKYKLCKVKKTQLGAKGVP 137


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  157 bits (380), Expect = 9e-39
 Identities = 84/142 (59%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNR         
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ-*VIRLIYDVKGRFTIHRITPEEAK 386
           V    +    K  GK      Y      +  L K     RL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
           YKLC V++   G K VP+LVTH
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTH 142



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
 Frame = +2

Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
           +KYAL G E   +    L+KVDGKVRTDP  PAG+MDV+++EKT  + F +  + K  + 
Sbjct: 52  LKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEF-FRLVYDVKGRFV 110

Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
            +     + +   C  ++ +   + VP
Sbjct: 111 IHRISAEEAKYKLCKVKKTQLGAKGVP 137


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  154 bits (374), Expect = 5e-38
 Identities = 83/142 (58%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
 Frame = +3

Query: 39  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMS 218
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNR         
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 219 VKM*TVSS--KWTGKCGL-TQYRRDLWTLYPLRKQ-*VIRLIYDVKGRFTIHRITPEEAK 386
           V    +    K  GK      Y      +  L K     RL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 387 YKLCNVRRVATGPKSVPYLVTH 452
           YKLC V++   G K VP+LVTH
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTH 142



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +2

Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRTDPV-PAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
           +KYAL G E   +    L+KV GKVRTDP  PAG+MDV+++EKT  + F +  + K  + 
Sbjct: 52  LKYALNGAEVTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEF-FRLVYDVKGRFV 110

Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
            +     + +   C  ++ +   + VP
Sbjct: 111 IHRISAEEAKYKLCKVKKTQLGAKGVP 137


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,034,396
Number of Sequences: 53049
Number of extensions: 465353
Number of successful extensions: 1271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)