Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G13
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   117   5e-27
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    27   6.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  117 bits (281), Expect = 5e-27
 Identities = 65/139 (46%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
 Frame = +3

Query: 45  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRSSTRSPAMSVK 224
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNR          K
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 225 M*TVSS--KWTGKCGLT-QYRRDLWTLYPL-RKQ*VIRLIYDVKGRFTIHRITPEEAKYK 392
                   +  GK     ++      +  + R     R++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 393 LCNVRRVATGPKSVPYLVT 449
           LC V+ V T  K VP L T
Sbjct: 122 LCKVKSVRTVNKGVPVLTT 140



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = +2

Query: 191 VKYALTGNEC*DV--NSLIKVDGKVRT-DPVPAGFMDVVSIEKTMSYPFNI*CERKVHYP 361
           +KYAL   E   +    +++VDGKVRT    P GFMDVV+IE+T  Y F +  + K  Y 
Sbjct: 51  LKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEY-FRMLYDTKGRYV 109

Query: 362 PYHT*RSQVQAVQCAARRDRPQERAVP 442
            +    ++     C  +  R   + VP
Sbjct: 110 VHRIQAAEADFKLCKVKSVRTVNKGVP 136


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 358 STVSHLK-KPSTSCAMCGASRP 420
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 307 LNGYNVHKSRRYWVSPHFPVHFDETVHILTLIAGER 200
           + GYN+HK RR+  S   P+ +++  H+L  +A  R
Sbjct: 450 VGGYNIHKFRRHDFSKGEPLTWEQ--HVLEEVAAIR 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,563
Number of Sequences: 27780
Number of extensions: 226578
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)