Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G12
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 26 0.78
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 1.0
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 25 1.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 1.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 1.8
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 24 3.2
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 24 3.2
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 23 5.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 23 5.5
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 23 5.5
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch... 22 9.6
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 22 9.6
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 0.78
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 78 RRVTVSSLITCIYLPSIIIVISYQGLLYSV 167
+++ V +I C+ P ++ + Y GL+YS+
Sbjct: 304 KQILVRPIILCVSEPIVLSLTIYIGLVYSI 333
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 75 LRRVTVSSLITCIYLP-SIIIVISYQG 152
LRR V L +C +LP S+I +SY G
Sbjct: 693 LRRAAVQLLDSCKHLPDSVITTLSYVG 719
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.0 bits (52), Expect = 1.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 3 TRIHNTLKK*DFL*IMFSLNNQLELRRVTVSSLITCIYLPSIIIVISYQGLLYSVGK 173
T+I NT K+ + + IM + + R S L+ C+YL + Y GL +G+
Sbjct: 157 TKIENTSKRLEIIDIMGTYF--FGILRDHPSDLLACVYLSINKLGPDYSGLELGIGE 211
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 66 QLELRRVTVSSLITCIYLPSIIIVISYQG 152
Q L R + LIT +PS+++ +SY+G
Sbjct: 2458 QSMLDRAGSNMLITYFKIPSVVLRLSYRG 2486
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 108 CIYLPS-IIIVISYQGLLYSVGKGSSFYNLVFIFI 209
C+++ + I+I++ Y YSV S FY L+ +FI
Sbjct: 169 CLFVINHILILLGYFQCSYSVFYASVFYILLGVFI 203
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 57 EKTLFIKNPTSSAY 16
E +FIKNP SAY
Sbjct: 438 EDNIFIKNPNGSAY 451
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 3.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 6 RIHNTLKK*DFL*IMFSLNNQLELRRVTVSSLITCIYLPSIIIVI 140
++H T+K+ + + F + L+ R VSSLIT LP I+ I
Sbjct: 400 KVH-TIKEFEKIVFYFYEASDLQQIRSLVSSLITVEELPKILTTI 443
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 54 KTLFIKNPTSSAYYES 7
+T K PTSSA+YE+
Sbjct: 250 RTRLTKPPTSSAFYEN 265
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 38 FINNVFSE*SIRTSTSN 88
FINN+FS+ S++ +SN
Sbjct: 769 FINNLFSKSSLKAISSN 785
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 57 EKTLFIKNPTSSAY 16
EK +F+KNP S Y
Sbjct: 420 EKDIFLKNPNGSIY 433
>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
Dap1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 166
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +3
Query: 129 IIVISYQGLLYSVGKGSSFY 188
++ ++ +G +Y+V GS FY
Sbjct: 58 LVFLAIKGTVYNVTMGSKFY 77
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 98 FNNLYLFT*HYNCYILPRTSVLCWKGIIFLQFSVYL 205
F+N LF+ + Y++PR V KG FS Y+
Sbjct: 316 FSNQLLFSTSKSDYVVPRLMVCGPKGSGKSSFSRYI 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,079
Number of Sequences: 5004
Number of extensions: 10776
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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