Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G12
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    26   3.2  
Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical p...    26   4.2  
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    26   4.2  
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    26   4.2  
U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    25   7.3  
AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related...    25   9.7  
AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related ...    25   9.7  

>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 102 ITCIYLPSIIIVISYQGLLYSVGKGSSFYNLVFIFI 209
           ITC +L   +  +S   L+YS   G SF  L ++ I
Sbjct: 57  ITCFWLDFNLSTLSIPYLIYSAAAGQSFGILAYLKI 92


>Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 54  SLNNQLELRRVTVSSLITCIYLPSIIIVISY 146
           SL N + LR+    +++ CIY+P I I  +Y
Sbjct: 221 SLQNYV-LRQANFLAIVKCIYIPLIYISAAY 250


>Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 54  SLNNQLELRRVTVSSLITCIYLPSIIIVISY 146
           SL N + LR+    +++ CIY+P I I  +Y
Sbjct: 221 SLQNYV-LRQANFLAIVKCIYIPLIYISAAY 250


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 108 CIYLPSIIIVISYQGLLYSVGKG 176
           C+YLPSI+I+ +Y     SV  G
Sbjct: 152 CMYLPSIVILSTYFAKKRSVATG 174


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 108 CIYLPSIIIVISYQGLLYSVGKG 176
           C+YLPSI+I+ +Y     SV  G
Sbjct: 152 CMYLPSIVILSTYFAKKRSVATG 174


>U00067-6|AAL08037.1|  167|Caenorhabditis elegans Hypothetical
           protein F54E7.9 protein.
          Length = 167

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 54  SLNNQLELR--RVTVSSLITCIYLPSIIIVISYQGLLY 161
           S +N LELR  RVT  ++ T   L S I  +SY    Y
Sbjct: 13  STDNSLELRLQRVTAENIKTVRILVSSIFPVSYSDKFY 50


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 84  VTVSSLIT-CIYLPSIIIVISYQGLLYSVGKGSSFYNLVFIF 206
           VT +S +T C++ PSI+ + + + LL   G   + + + F+F
Sbjct: 58  VTFASFMTACLFAPSILNLTTPKFLLVFAGISYALFPMGFLF 99


>AF045646-10|AAU05566.1|  548|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           b protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 69  LELRRVTVSSLITCIYLPSIIIVISYQGLLYSVGKG 176
           LEL R ++  + T +YL  I    S + ++Y  GKG
Sbjct: 351 LELARSSIDQIKT-LYLEEIATDSSSKSIIYEFGKG 385


>AF045646-9|AAL32223.1|  660|Caenorhabditis elegans Skp1 related
           (ubiquitin ligasecomplex component) protein 18, isoform
           a protein.
          Length = 660

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 69  LELRRVTVSSLITCIYLPSIIIVISYQGLLYSVGKG 176
           LEL R ++  + T +YL  I    S + ++Y  GKG
Sbjct: 351 LELARSSIDQIKT-LYLEEIATDSSSKSIIYEFGKG 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,981,305
Number of Sequences: 27780
Number of extensions: 54900
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)