Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G11
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 1.7
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 26 2.9
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 3.9
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 3.9
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 5.1
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 25 5.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 5.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.7
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 24 8.9
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 24 8.9
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 361 NRIIPIKKQNITPNRKINDFST 296
NR +PI++ ++T N N FST
Sbjct: 349 NRSMPIRRPSLTSNNSANTFST 370
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 2.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 78 RRVTVSSLITCIYLPSIIIVISYQGLLYSV 167
+++ V +I C+ P ++ + Y GL+YS+
Sbjct: 304 KQILVRPIILCVSEPIVLSLTIYIGLVYSI 333
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 3.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 75 LRRVTVSSLITCIYLP-SIIIVISYQG 152
LRR V L +C +LP S+I +SY G
Sbjct: 693 LRRAAVQLLDSCKHLPDSVITTLSYVG 719
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 3.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -2
Query: 309 MILVHRWLCSCSVLLFFLGYHSWNLNKMTLVIQ 211
M+L +WL + S+LLF+L + L+ +T+ IQ
Sbjct: 214 MVLCVQWLANVSLLLFYLKKDN-KLDDLTVDIQ 245
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/48 (22%), Positives = 21/48 (43%)
Frame = -1
Query: 436 GNAVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKINDFSTS 293
G++ + + N + S + I K+N+TPN I +T+
Sbjct: 45 GDSAETIEFISDFNQKRFHSTHSGNSPSIMKNKKNVTPNNNIRQKNTA 92
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 25.0 bits (52), Expect = 5.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 3 TRIHNTLKK*DFL*IMFSLNNQLELRRVTVSSLITCIYLPSIIIVISYQGLLYSVGK 173
T+I NT K+ + + IM + + R S L+ C+YL + Y GL +G+
Sbjct: 157 TKIENTSKRLEIIDIMGTYF--FGILRDHPSDLLACVYLSINKLGPDYSGLELGIGE 211
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 108 CIYLPS-IIIVISYQGLLYSVGKGSSFYNLVFIFIAELLKSFYLNSTNDIQGK 263
C+++ + I+I++ Y YSV S FY L+ +FI + FYL + + K
Sbjct: 169 CLFVINHILILLGYFQCSYSVFYASVFYILLGVFI----RVFYLVNKEKFEKK 217
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 66 QLELRRVTVSSLITCIYLPSIIIVISYQG 152
Q L R + LIT +PS+++ +SY+G
Sbjct: 2458 QSMLDRAGSNMLITYFKIPSVVLRLSYRG 2486
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 201 IFIAELLKSFYLNSTNDIQGKRAKPNKN 284
+ I EL ++ +LNS N+++ A+ N+N
Sbjct: 303 LLINELNRTSFLNSNNNLKLNEAEENQN 330
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 8.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 427 VNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKINDFSTS 293
VNK + +ES + S NR KQ+ TP +ND S+S
Sbjct: 261 VNKQQQIESPTATFPLSKNTWKNRFHTFHKQSFTP---VNDSSSS 302
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 290 QRCTKIIY--LPIGGYVLFFYWNYSV 361
++C K++ +PI G +L W YS+
Sbjct: 3 RKCRKLLLKGIPICGVILLILWGYSL 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,317
Number of Sequences: 5004
Number of extensions: 32486
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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