Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G11
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0207 - 13790801-13792057                                         29   1.6  
11_06_0511 - 24434007-24436814                                         28   3.8  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    27   5.0  
12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805...    27   8.7  

>01_03_0207 - 13790801-13792057
          Length = 418

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 129 IIVISYQGLLYSVGKGSS---FYNLVFIFIAELLKSFYLNSTNDIQGKRAKPNKNKASDV 299
           I++ISY  LL    +  S   F  ++ +FI  L + F++  T   Q +   P  +KAS V
Sbjct: 43  IVLISYVFLLLINTRYISLAVFPAIMIVFIGALCRKFWVEETCRRQLRHDSPGASKASSV 102

Query: 300 LK 305
           L+
Sbjct: 103 LR 104


>11_06_0511 - 24434007-24436814
          Length = 935

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +3

Query: 69  LELRRVTVSSLITCIYLPSIIIVISYQGLLYSVGKGSSFYNLVFIFIAELLKSFYLNSTN 248
           +ELR VT+  +  C +LP  I+ I    LL S  K  S ++ +   I ++ KS   +S N
Sbjct: 397 IELREVTLKIIGLCNFLPQAIVSIG--ALLSSKQKTESVWSEMAQQIEDIQKS--KSSLN 452

Query: 249 DIQ 257
           ++Q
Sbjct: 453 NVQ 455


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +3

Query: 162 SVGKGSSFYNLVF-------IFIAELLKSFYLNSTNDIQGKRAKPN 278
           S+G G+S Y+L         IF+ ++ + +YL      QG +  PN
Sbjct: 347 SIGNGNSIYDLSIQLSSGGGIFVDQIGQKYYLQQVGIAQGSKLSPN 392


>12_02_0031 -
           12477787-12478413,12480182-12480268,12480371-12480562,
           12480638-12480766,12480840-12480926,12483076-12483537,
           12485088-12485222
          Length = 572

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
 Frame = +2

Query: 278 QEQSQRCTKIIYLPIGGYV-----LFFYWN----YSVRCTCIGLPRRNV-NAFNT 412
           +E++  CTK++ L    +V     + +YW     ++V CTC+G    ++ N++N+
Sbjct: 279 RERASFCTKLLALTKRSFVNMHRDMGYYWMRFAVFTVACTCVGTVFHHIDNSYNS 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,441
Number of Sequences: 37544
Number of extensions: 165303
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)