Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G11
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1 ...    29   7.0  
AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1 ...    29   7.0  
AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP...    29   7.0  
AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protei...    29   7.0  
AL031703-1|CAC42094.1|  808|Homo sapiens c302G6.1 (calcium chann...    29   9.3  

>AF152242-1|AAD46774.1| 2156|Homo sapiens retinitis pigmentosa 1
            protein protein.
          Length = 2156

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171  KGSSFYNLVFIFIAELLKSFYLNSTNDIQGKRAKPNK 281
            K S   NL+   I ++   FY ++T D+ GKR K  +
Sbjct: 1973 KASMRQNLIDNAIGDIFDQFYFSNTFDLMGKRRKQKR 2009


>AF146592-1|AAD46769.1| 2156|Homo sapiens retinitis pigmentosa 1
            protein protein.
          Length = 2156

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171  KGSSFYNLVFIFIAELLKSFYLNSTNDIQGKRAKPNK 281
            K S   NL+   I ++   FY ++T D+ GKR K  +
Sbjct: 1973 KASMRQNLIDNAIGDIFDQFYFSNTFDLMGKRRKQKR 2009


>AF143226-1|AAD44197.1| 2156|Homo sapiens retinitis pigmentosa RP1
            protein protein.
          Length = 2156

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171  KGSSFYNLVFIFIAELLKSFYLNSTNDIQGKRAKPNK 281
            K S   NL+   I ++   FY ++T D+ GKR K  +
Sbjct: 1973 KASMRQNLIDNAIGDIFDQFYFSNTFDLMGKRRKQKR 2009


>AF141021-1|AAD42072.1| 2156|Homo sapiens oxygen-regulated protein 1
            protein.
          Length = 2156

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171  KGSSFYNLVFIFIAELLKSFYLNSTNDIQGKRAKPNK 281
            K S   NL+   I ++   FY ++T D+ GKR K  +
Sbjct: 1973 KASMRQNLIDNAIGDIFDQFYFSNTFDLMGKRRKQKR 2009


>AL031703-1|CAC42094.1|  808|Homo sapiens c302G6.1 (calcium channel,
           voltage-dependent, alpha 1H subunit) protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 120 PSIIIVISYQGLLYSVGKGSSFYNLVFIFIAELLKSFYL 236
           P +I +  +  ++Y V    SFYN ++  +  ++ SF++
Sbjct: 363 PQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFM 401


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,958,071
Number of Sequences: 237096
Number of extensions: 1035594
Number of successful extensions: 1757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1757
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)