Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G11
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical p... 29 2.0
AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine r... 28 2.6
Z92797-4|CAB07238.3| 478|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z92797-3|CAB07237.2| 445|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z83118-3|CAB05577.3| 478|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z83118-2|CAB05576.2| 445|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z81473-8|CAB03899.2| 418|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z81473-4|CAB03891.1| 463|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL031636-1|CAA21046.2| 418|Caenorhabditis elegans Hypothetical ... 27 4.5
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 27 4.5
>Z83238-11|CAE11318.1| 326|Caenorhabditis elegans Hypothetical
protein T08G3.12 protein.
Length = 326
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 102 ITCIYLPSIIIVISYQGLLYSVGKGSSFYNLVFIFIAELLKSFYLNST 245
ITC +L + +S L+YS G SF L ++ I + FY+ +T
Sbjct: 57 ITCFWLDFNLSTLSIPYLIYSAAAGQSFGILAYLKI-PMSFQFYMGAT 103
>AF039053-17|AAC25882.2| 279|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 16 protein.
Length = 279
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 159 YSVGKGSSFYNLVFIFIAELLKSFYLNSTNDIQGKRAKPNKNKASDVLKSFIFLLG-VMF 335
YS+ KG+++ V I K F+LN + Q +K N D IF ++F
Sbjct: 170 YSINKGTAYILTVMFAILLSTKLFFLNKDSTEQKTLSKANLLALIDAANVIIFHFSPILF 229
Query: 336 CF 341
F
Sbjct: 230 AF 231
>Z92797-4|CAB07238.3| 478|Caenorhabditis elegans Hypothetical
protein H25P06.2b protein.
Length = 478
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 430 AVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 308
++NK +N+ W + + PN +P K I PN+ N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357
>Z92797-3|CAB07237.2| 445|Caenorhabditis elegans Hypothetical
protein H25P06.2a protein.
Length = 445
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 430 AVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 308
++NK +N+ W + + PN +P K I PN+ N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357
>Z83118-3|CAB05577.3| 478|Caenorhabditis elegans Hypothetical
protein H25P06.2b protein.
Length = 478
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 430 AVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 308
++NK +N+ W + + PN +P K I PN+ N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357
>Z83118-2|CAB05576.2| 445|Caenorhabditis elegans Hypothetical
protein H25P06.2a protein.
Length = 445
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 430 AVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 308
++NK +N+ W + + PN +P K I PN+ N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 433 NAVNKVRSVESINVSSWQSN 374
N + K R +ES N+S WQSN
Sbjct: 2154 NELMKARHMESKNISMWQSN 2173
>Z81473-8|CAB03899.2| 418|Caenorhabditis elegans Hypothetical
protein Y47H9A.1 protein.
Length = 418
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 234 LNSTNDIQGK-RAKPNKNKASDVLKSFIFLLGVMFCFFIGIILFGAPVLD 380
L+ TN Q + R+ P+K + VL +F L F FF+ + LFG D
Sbjct: 13 LSGTNISQAEARSHPSKKIVALVLVGTLFFL---FSFFLAVALFGGSSTD 59
>Z81473-4|CAB03891.1| 463|Caenorhabditis elegans Hypothetical
protein C17D12.3 protein.
Length = 463
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 234 LNSTNDIQGK-RAKPNKNKASDVLKSFIFLLGVMFCFFIGIILFGAPVLD 380
L+ TN Q + R+ P+K + VL +F L F FF+ + LFG D
Sbjct: 13 LSGTNISQAEARSHPSKKIVALVLVGTLFFL---FSFFLAVALFGGSSTD 59
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 433 NAVNKVRSVESINVSSWQSN 374
N + K R +ES N+S WQSN
Sbjct: 2154 NELMKARHMESKNISMWQSN 2173
>AL031636-1|CAA21046.2| 418|Caenorhabditis elegans Hypothetical
protein Y47H9A.1 protein.
Length = 418
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 234 LNSTNDIQGK-RAKPNKNKASDVLKSFIFLLGVMFCFFIGIILFGAPVLD 380
L+ TN Q + R+ P+K + VL +F L F FF+ + LFG D
Sbjct: 13 LSGTNISQAEARSHPSKKIVALVLVGTLFFL---FSFFLAVALFGGSSTD 59
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 433 NAVNKVRSVESINVSSWQSN 374
N + K R +ES N+S WQSN
Sbjct: 2154 NELMKARHMESKNISMWQSN 2173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,585
Number of Sequences: 27780
Number of extensions: 175287
Number of successful extensions: 553
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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