Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G10
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    56   2e-08
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    56   2e-08
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    56   2e-08
Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/91 (29%), Positives = 50/91 (54%)
 Frame = +3

Query: 207  YMSKKTSDTEKKYTSYELEALAIIESVKKFRKYLYGIKFKIVTDCQAFEMTLRKKDLTTR 386
            + SK  S  E +Y   +LEALA++ ++++F+  +YG    + TD +     L+   L  R
Sbjct: 1359 FASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADR 1418

Query: 387  VARWALVLQEYEYEVEHRTGSQMRHVDALSR 479
            + RW++ + E++ ++ +  G      DALSR
Sbjct: 1419 LWRWSIEILEFDVKIVYLAGKANAVADALSR 1449



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
 Frame = +2

Query: 20   FVFETPQQAAFQELKMTLASTPVLKIFDPQLYTE------LHTDASMLALAAILLQRSTE 181
            +++E  Q+ AFQELK  +  TPVL   D +   +      ++TDAS   + A+L Q    
Sbjct: 1292 WIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEG-P 1350

Query: 182  DGQLHPV 202
            DGQ HP+
Sbjct: 1351 DGQQHPI 1357


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/91 (29%), Positives = 50/91 (54%)
 Frame = +3

Query: 207  YMSKKTSDTEKKYTSYELEALAIIESVKKFRKYLYGIKFKIVTDCQAFEMTLRKKDLTTR 386
            + SK  S  E +Y   +LEALA++ ++++F+  +YG    + TD +     L+   L  R
Sbjct: 1262 FASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADR 1321

Query: 387  VARWALVLQEYEYEVEHRTGSQMRHVDALSR 479
            + RW++ + E++ ++ +  G      DALSR
Sbjct: 1322 LWRWSIEILEFDVKIVYLAGKANAVADALSR 1352



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
 Frame = +2

Query: 20   FVFETPQQAAFQELKMTLASTPVLKIFDPQLYTE------LHTDASMLALAAILLQRSTE 181
            +++E  Q+ AFQELK  +  TPVL   D +   +      ++TDAS   + A+L Q    
Sbjct: 1195 WIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEG-P 1253

Query: 182  DGQLHPV 202
            DGQ HP+
Sbjct: 1254 DGQQHPI 1260


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/91 (29%), Positives = 50/91 (54%)
 Frame = +3

Query: 207  YMSKKTSDTEKKYTSYELEALAIIESVKKFRKYLYGIKFKIVTDCQAFEMTLRKKDLTTR 386
            + SK  S  E +Y   +LEALA++ ++++F+  +YG    + TD +     L+   L  R
Sbjct: 1273 FASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSPLADR 1332

Query: 387  VARWALVLQEYEYEVEHRTGSQMRHVDALSR 479
            + RW++ + E++ ++ +  G      DALSR
Sbjct: 1333 LWRWSIEILEFDVKIVYLAGKANAVADALSR 1363



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
 Frame = +2

Query: 20   FVFETPQQAAFQELKMTLASTPVLKIFDPQLYTE------LHTDASMLALAAILLQRSTE 181
            +++E  Q+ AFQELK  +  TPVL   D +   +      ++TDAS   + A+L Q    
Sbjct: 1206 WIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEG-P 1264

Query: 182  DGQLHPV 202
            DGQ HP+
Sbjct: 1265 DGQQHPI 1271


>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 117 QNCTQTHLCWHWQPYYFKDPQKMVSYIQYDYMSKKTS 227
           Q   +T   + W  +Y+  PQ + +Y+ YD+ +KKT+
Sbjct: 40  QAFVKTFKTYVWDQWYYYIPQTIGAYLLYDW-AKKTN 75


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 117 QNCTQTHLCWHWQPYYFKDPQKMVSYIQYDYMSKKTS 227
           Q   +T   + W  +Y+  PQ + +Y+ YD+ +KKT+
Sbjct: 40  QAFVRTFKTYVWDQWYYYIPQTIGAYLLYDW-AKKTN 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,554
Number of Sequences: 27780
Number of extensions: 289678
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)