Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G09
         (387 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles ...   159   4e-41
AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      26   0.55 
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    26   0.55 
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   5.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    22   9.0  

>U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S8 mRNA, complete cds.
           ).
          Length = 135

 Score =  159 bits (385), Expect = 4e-41
 Identities = 69/109 (63%), Positives = 94/109 (86%)
 Frame = +2

Query: 8   AIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVE 187
           AI+V+DA+PFRQWYESHYLLPLG+K+  +L   EE +++KKR++   +KY+ RQ+ +K++
Sbjct: 29  AIIVIDASPFRQWYESHYLLPLGKKR--ELKAGEEDVLSKKRTKSNLRKYVKRQKNAKID 86

Query: 188 GGLEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 334
             +EEQF+ GRLLAC++SRPGQ GRADGYILEGKELEFYL+KIK+K++K
Sbjct: 87  PAVEEQFNAGRLLACISSRPGQVGRADGYILEGKELEFYLKKIKNKKSK 135


>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 184 YLGQALPAQVLLRCLLTAFFVYDGFLSLSELGTFLPSEWQQVVAFI 47
           + G ++P + LL C   A F+++ ++ L E  T L   +   V F+
Sbjct: 348 FCGDSIPQRALLSCAFGAVFIFN-YIPLQEGTTRLRYTFFYAVCFV 392


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  WMPHLSGSGMKATTCCHSEGRKVPS 95
           W+PH+    +KAT   H+  R +P+
Sbjct: 819 WVPHVKEITLKATRIVHAVNRLMPN 843


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 243 GPVSAVAPMVTFWKVKSW 296
           GPV+   P V +W ++ W
Sbjct: 140 GPVNLKTPDVHYWYIEFW 157


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 74  GRKKGAKLTEAEEAIINKKRSQKTAKK 154
           G +KG    EA  A++ K+RS    K+
Sbjct: 507 GFRKGRSTGEAIAAVLKKRRSALLKKR 533


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,184
Number of Sequences: 2352
Number of extensions: 8338
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29929410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)