Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G08
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   1.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.5  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   7.9  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 129 TTVPALSAASDRVAKVFGFPNPC*SLSFLW 40
           T+V ALS  +  ++ VFGF NP  ++  LW
Sbjct: 692 TSVAALSLIA--ISSVFGFQNPLNAMQILW 719


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 145 LYWQNRVTYLSKLRINNSKKH*ECLQKYRFLTLK 246
           L W+N+   L+KL     ++H + L KY+ + LK
Sbjct: 475 LTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLK 508


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 30  YESPKGTIVTSTDLENRRLSQLDQMQLRAPEQL-SGQKPALLAKPSNIPVKAADKQQQKA 206
           YE       T  + E   +SQL+Q  L A E+L   ++   LAKP       +  +QQ++
Sbjct: 68  YEGELKKTQTFCEAEKTEISQLEQDLLVAQEELRKREQYDELAKPIMSKGLRSRTEQQES 127

Query: 207 LG 212
           +G
Sbjct: 128 IG 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,589
Number of Sequences: 5004
Number of extensions: 33576
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)