Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G08
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0090 + 13493311-13494180 30 1.1
01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768 30 1.1
04_04_0438 - 25200419-25200670,25202570-25202917,25203529-252036... 29 2.0
10_08_0051 + 14489255-14490403 29 2.6
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 29 2.6
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 28 4.5
09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727... 27 6.0
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 6.0
>12_02_0090 + 13493311-13494180
Length = 289
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/97 (21%), Positives = 37/97 (38%)
Frame = +3
Query: 24 ATYESPKGTIVTSTDLENRRLSQLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQK 203
AT P + TST + + + P S KPA + P+ +P + +
Sbjct: 74 ATTRRPSAVVATSTPTAPSQTTAPSLATILVPATTSAPKPATASSPTKVPALSVN-PILS 132
Query: 204 ALGVSSKIPIFNTQKSLSQENLTDTKFTLSRSPPPEF 314
+GV S + + + + + TLS + P F
Sbjct: 133 IIGVPSPTTTSSLATTTTSTAVLFPRSTLSSASTPSF 169
>01_07_0055 + 40782559-40782882,40784448-40784551,40784759-40784768
Length = 145
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +3
Query: 51 IVTSTDLENRRLSQLDQMQLRAPE-----QLSGQKPALLAKPSNIPVKAAD-KQQQKALG 212
I T L+ ++LS++ + + R E + S P L A + +A +QQQ+ LG
Sbjct: 70 IEAQTFLDMQKLSRIHEQRRRKKEARKQQETSSPPPVLQAHQGEVICNSASIEQQQQQLG 129
Query: 213 VSSKIPIFNTQKSLSQ 260
VS + + Q S SQ
Sbjct: 130 VSVQWSVVQVQHSWSQ 145
>04_04_0438 -
25200419-25200670,25202570-25202917,25203529-25203600,
25203996-25204025
Length = 233
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 51 IVTSTDLENRR-LSQLDQM-QLRAPEQLSGQKPALLAKPSNIPVKAADKQQQKALGVSSK 224
IV DLE +S + M L+ P++L +P + ++IP + QK +
Sbjct: 59 IVIDADLEEEENMSDMSSMLNLQGPDKLGNNQPLDIVPLNSIPFRQEVAFHQKVDSSKEE 118
Query: 225 IPIFNTQKSLSQENLTDTKFTL 290
+P+ K L +N D +T+
Sbjct: 119 VPVPQWMKQL--DNYKDGDWTV 138
>10_08_0051 + 14489255-14490403
Length = 382
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 416 YCSIYLVFIYLYFTTAGASRTAFDRSNRNVPGTAKFRRR*TGQGKFSVRQI 264
Y S+YL + A A+ + DR+ + P +A + R G+F+V I
Sbjct: 83 YISVYLCLVEGQPVKARATFSLLDRAGQPAPASASYYTRDMPMGRFAVSDI 133
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 28.7 bits (61), Expect = 2.6
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +3
Query: 63 TDLENRRLSQLDQ-MQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQKALGVSSKIPIFN 239
+ L N++ DQ +QL+ ++L Q+ +LL++P+ + Q+Q+ L + + + N
Sbjct: 587 SSLANQQFQLTDQQLQLQLLQKLQQQQQSLLSQPAVTLAQLPLIQEQQKLLLDMQQQLSN 646
Query: 240 TQKSLSQENL---TDTKFTLSRSPPP 308
+Q +LSQ+ + TK +P P
Sbjct: 647 SQ-TLSQQQMMPQQSTKVPSQNTPLP 671
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 234 KSVFLKTLLMLFAVVYPQL*QVCYSVL 154
KS+FLK + V PQL +VCY +L
Sbjct: 424 KSLFLKRIFGSKDVCIPQLDEVCYEIL 450
>09_02_0325 +
7276650-7276770,7276979-7277055,7277146-7277188,
7277276-7277333,7277922-7277991,7278202-7278670,
7278895-7278959
Length = 300
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 QMQLRAPEQLSGQKPALLA-KPSNIPVKAADKQQQKALGVSSKIPIFNTQKSLSQENLTD 275
++Q R EQL Q+ L + +K ++QQ+ GV S+ P +L + D
Sbjct: 113 EVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLGGVKSETPAAGASVTLPSDQFPD 172
Query: 276 TKFTLSRSPPP 308
++ T +P P
Sbjct: 173 SERTDPSTPAP 183
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 51 IVTSTDLENRRLS-QLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQKALGVSSKI 227
I + D NR+LS M+ + + L + P LL + D + A VSS+
Sbjct: 41 IALNADFVNRKLSGSAIMMKEGSIKSLLVRIPLLLNMRDCCEIVVEDLELVLAASVSSED 100
Query: 228 PIFNTQKSLSQENLTDTK 281
P +T+ S+S N DT+
Sbjct: 101 PSGDTECSVSGSNTDDTQ 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,385,100
Number of Sequences: 37544
Number of extensions: 203497
Number of successful extensions: 488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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