Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G08
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 3.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 3.1
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 28 3.1
Z81570-6|CAB04607.2| 725|Caenorhabditis elegans Hypothetical pr... 28 4.1
AY887911-1|AAX34423.1| 737|Caenorhabditis elegans anion transpo... 28 4.1
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 28 4.1
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 5.4
AY323527-1|AAP78770.1| 563|Caenorhabditis elegans grainyhead tr... 27 7.1
AC024797-1|AAF60703.3| 563|Caenorhabditis elegans Grainyhead (d... 27 7.1
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 27 9.4
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 27 9.4
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +3
Query: 33 ESPKGTIVTSTDLENRRLSQLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQKALG 212
E+P+ VT+ + E +++S++D +Q A ++ +K KP+++ D + +K
Sbjct: 12579 ETPESEQVTAAEPEQQKISEVD-VQSVAETEVGAKKKPDAEKPTDLSKAKKDSKSKK--- 12634
Query: 213 VSSKIPIFNTQKSLSQENLTDTK 281
S P +T++ + E T+ K
Sbjct: 12635 --SDEPEASTEEKSTTEKPTNDK 12655
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +3
Query: 33 ESPKGTIVTSTDLENRRLSQLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQKALG 212
E+P+ VT+ + E +++S++D +Q A ++ +K KP+++ D + +K
Sbjct: 12579 ETPESEQVTAAEPEQQKISEVD-VQSVAETEVGAKKKPDAEKPTDLSKAKKDSKSKK--- 12634
Query: 213 VSSKIPIFNTQKSLSQENLTDTK 281
S P +T++ + E T+ K
Sbjct: 12635 --SDEPEASTEEKSTTEKPTNDK 12655
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 84 LSQLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQKALGVSSKIP 230
L +L+ + R E ++GQKPAL KP+N+ +A + G S ++P
Sbjct: 8 LKRLESVTSRL-EAIAGQKPALAPKPTNLGGPSA--SAAASAGDSGEVP 53
>Z81570-6|CAB04607.2| 725|Caenorhabditis elegans Hypothetical
protein K12G11.2 protein.
Length = 725
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 428 LFGFYCSIYLVFIYLYFTTA 369
+ G Y SIY VF+Y++F T+
Sbjct: 119 IVGLYTSIYPVFLYIFFGTS 138
>AY887911-1|AAX34423.1| 737|Caenorhabditis elegans anion
transporter SULP-5 protein.
Length = 737
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 428 LFGFYCSIYLVFIYLYFTTA 369
+ G Y SIY VF+Y++F T+
Sbjct: 131 IVGLYTSIYPVFLYIFFGTS 150
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform a protein.
Length = 1256
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 84 LSQLDQMQLRAPEQLSGQKPALLAKPSNI 170
L +L+ + R E ++GQKPAL KP+N+
Sbjct: 8 LKRLESVTSRL-EAIAGQKPALAPKPTNL 35
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 6 protein.
Length = 1254
Score = 27.5 bits (58), Expect = 5.4
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Frame = +3
Query: 27 TYESPKGTIVTSTDLENRRLSQLDQM--QLRAPEQLSGQKPALLAKPSNIPVKAADKQQQ 200
T S +T EN L Q + + + G + + K VK A+
Sbjct: 891 TTTSESAAFITGESPENTALQSSSQKSEENESSAEKPGARRDFVPKKHKTTVKPAETTSA 950
Query: 201 KALGVSSKIPIFNTQKSLSQENLTDTKFTLSRSPPPEF 314
A ++ PI T+KS + E TL+ P F
Sbjct: 951 VAASTTTTEPITTTEKSTTLETTPIEATTLNEVTGPAF 988
>AY323527-1|AAP78770.1| 563|Caenorhabditis elegans grainyhead
transcription factor protein.
Length = 563
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 184 AALTGMLLGFANKAGFCPDNCSG 116
A+L+G+ L ANK G PD SG
Sbjct: 484 ASLSGLALAIANKFGADPDKMSG 506
>AC024797-1|AAF60703.3| 563|Caenorhabditis elegans Grainyhead
(drosophila transcriptionfactor) homolog protein 1
protein.
Length = 563
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 184 AALTGMLLGFANKAGFCPDNCSG 116
A+L+G+ L ANK G PD SG
Sbjct: 484 ASLSGLALAIANKFGADPDKMSG 506
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 45 GTIVTSTDLENRRLSQLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQK 203
G VT+T E R ++ M L AP LSG+ + +PS PV+ + + +
Sbjct: 791 GAAVTNTH-EVRTDEAVNSMLLSAPPSLSGEGATMDWQPSITPVEERSESKSQ 842
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 45 GTIVTSTDLENRRLSQLDQMQLRAPEQLSGQKPALLAKPSNIPVKAADKQQQK 203
G VT+T E R ++ M L AP LSG+ + +PS PV+ + + +
Sbjct: 791 GAAVTNTH-EVRTDEAVNSMLLSAPPSLSGEGATMDWQPSITPVEERSESKSQ 842
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,126,599
Number of Sequences: 27780
Number of extensions: 189838
Number of successful extensions: 585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -