Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G08
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.32 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 428 LFGFYCSIY-LVFIYLYFTTAGASRTAFDRSNRNVPGTAKFRR 303
           ++ FY + + L F  L       SRT  D SNR +P  A +++
Sbjct: 358 IYAFYSADFRLAFWRLTCRKCFKSRTNLDPSNRKLPAPANWKK 400


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 115 RRNSCLGKNPLYWQNRVT 168
           RRNSCLG    Y+    T
Sbjct: 375 RRNSCLGSTETYYSKHNT 392


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 171 VCYSVLPIKRVFAQTTVPALSAASDRVAK 85
           V YSVL I      TTV  L     RV+K
Sbjct: 42  VFYSVLMIISAIGNTTVLILITCRKRVSK 70


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 CFLLLFIRSFDRYVTRF 156
           CFLL  + S D+Y T++
Sbjct: 12  CFLLGEVFSEDKYTTKY 28


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 392 IYLYFTTAGASRTAFDRSNRNVPGTAKFRRR 300
           IY++FTT+G     F +  R     A  R +
Sbjct: 601 IYIWFTTSGTISEKFRKLIRIEDNVATLRMK 631


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 CFLLLFIRSFDRYVTRF 156
           CFLL  + S D+Y T++
Sbjct: 12  CFLLGEVFSEDKYTTKY 28


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 392 IYLYFTTAGASRTAFDRSNRNVPGTAKFRRR 300
           IY++FTT+G     F +  R     A  R +
Sbjct: 548 IYIWFTTSGTISEKFRKLIRIEDDVATLRMK 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,593
Number of Sequences: 438
Number of extensions: 2517
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)