Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G06
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.1  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   1.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.5  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   2.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   4.4  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   7.7  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   7.7  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -3

Query: 339 LMTSFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSS 202
           L +S  + ++KAH Q L++    +S+       L V++SH+N+PS+
Sbjct: 170 LPSSRMVRLSKAH-QPLRIPTTGVSLDSADLTPLSVSTSHLNHPST 214


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 303 HSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMF-SNGY 175
           H + ++ VD DL I CF+ G    AS   ++PS  Y +  +N Y
Sbjct: 20  HIRCVECVDFDLCIPCFTSG----ASLGTHHPSHPYRIIETNSY 59


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 255 FSHGQLYVASSHVNNPSSLYAMFSN 181
           F HG++Y++ SH+   SS++   +N
Sbjct: 225 FLHGRMYLSESHICFNSSIFGWVTN 249


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 96  WNSDFGQHFLDVSFGLF 146
           WN +FG HF+ VS  LF
Sbjct: 302 WNHNFGIHFMRVSSDLF 318


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  PYQLVCIILTYLLLAVPTTSSAWNSD 107
           P+ ++CII T L +A    S  W S+
Sbjct: 612 PFGILCIIFTVLEIAAEEYSPNWESE 637


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HEGTKLN*LTLPTGLYYTNIFT 67
           H+G  L+  + P G+Y  NIFT
Sbjct: 103 HDGNGLSDASDPEGIYTNNIFT 124


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2   HEGTKLN*LTLPTGLYYTNIFT 67
           H+G  L+  + P G+Y  NIFT
Sbjct: 103 HDGNGLSDASDPQGIYTNNIFT 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,103
Number of Sequences: 5004
Number of extensions: 39391
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)