Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G06
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0755 - 5806614-5806939,5807039-5809415                           30   1.1  
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    29   2.5  
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    27   7.6  
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265...    27   7.6  

>07_01_0755 - 5806614-5806939,5807039-5809415
          Length = 900

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 248 TVSFMWLRHMLIILAACMLCSPMA 177
           TVSF W + ML +L   MLC+  A
Sbjct: 857 TVSFAWRKQMLAVLKVAMLCTERA 880


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 221 MLIILAACMLCSPMAIRCNDGDY---NPK*TKRYIQKMLPKV 105
           +L++   C L  P A+ CN+ +Y   +P  +  Y   M+PKV
Sbjct: 99  LLLLREECRLVVPWAVDCNENEYLVFDPTRSPNYELFMVPKV 140


>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 236 MWLRHMLIILAACMLCSPMA 177
           +WLR+  I  A C+LC+P++
Sbjct: 669 IWLRNYFISNAKCVLCTPLS 688


>10_08_0740 +
           20225351-20225683,20225750-20226022,20226423-20226548,
           20226676-20226732,20226994-20227083
          Length = 292

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 107 LWAAFFGCIFWFILD-YNHRRYIV*PLENIAY 199
           L    FG  + F+ D   HRR+ V P+EN+ Y
Sbjct: 204 LGITLFGMAYMFVHDGLVHRRFPVGPIENVPY 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,221
Number of Sequences: 37544
Number of extensions: 232913
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)