Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G06
         (470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88540-1|AAC34137.1|  786|Homo sapiens Toll-like receptor 1 prot...    30   3.5  
D13637-1|BAA02801.2|  789|Homo sapiens KIAA0012 protein.               30   3.5  
CR533562-1|CAG38593.1|  786|Homo sapiens TLR1 protein.                 30   3.5  
BC109094-1|AAI09095.1|  786|Homo sapiens toll-like receptor 1 pr...    30   3.5  
BC109093-1|AAI09094.1|  786|Homo sapiens toll-like receptor 1 pr...    30   3.5  
AB067334-1|BAC02371.1|  120|Homo sapiens immunoglobulin heavy ch...    29   8.1  

>U88540-1|AAC34137.1|  786|Homo sapiens Toll-like receptor 1
           protein.
          Length = 786

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 LNGKLYGMRGTRGIHTLSPVKISAFTHVLINGKL 468
           +N K + + GTR +H L P KIS F H+  +  L
Sbjct: 326 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 359


>D13637-1|BAA02801.2|  789|Homo sapiens KIAA0012 protein.
          Length = 789

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 LNGKLYGMRGTRGIHTLSPVKISAFTHVLINGKL 468
           +N K + + GTR +H L P KIS F H+  +  L
Sbjct: 329 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 362


>CR533562-1|CAG38593.1|  786|Homo sapiens TLR1 protein.
          Length = 786

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 LNGKLYGMRGTRGIHTLSPVKISAFTHVLINGKL 468
           +N K + + GTR +H L P KIS F H+  +  L
Sbjct: 326 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 359


>BC109094-1|AAI09095.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 LNGKLYGMRGTRGIHTLSPVKISAFTHVLINGKL 468
           +N K + + GTR +H L P KIS F H+  +  L
Sbjct: 326 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 359


>BC109093-1|AAI09094.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 LNGKLYGMRGTRGIHTLSPVKISAFTHVLINGKL 468
           +N K + + GTR +H L P KIS F H+  +  L
Sbjct: 326 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 359


>AB067334-1|BAC02371.1|  120|Homo sapiens immunoglobulin heavy chain
           VHDJ region protein.
          Length = 120

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 240 ADRAKNS*YLDPNPQLLASDYGLY*LSSRNWS*AHWKLD 356
           AD++ ++ YL  N  L ASD  +Y   +RNW   HW  D
Sbjct: 72  ADKSISTAYLQYN-SLKASDTAMY-YCARNWGVPHWYFD 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,357,437
Number of Sequences: 237096
Number of extensions: 1294705
Number of successful extensions: 2104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)